Effective results for Staphylococcus capitis C87 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 26 proteins (11 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
435838.HMPREF0786_01299PF05257ER
435838.HMPREF0786_02032PF05257ER; (ER)
435838.HMPREF0786_01144PF11070ER
435838.HMPREF0786_01463PF05257ER
435838.HMPREF0786_00980(PF00344)(mitochondrial)
435838.HMPREF0786_01053PF05257(mitochondrial)
435838.HMPREF0786_01642PF11070ER
435838.HMPREF0786_01494(PF00344)ER
435838.HMPREF0786_01943PF05257(mitochondrial)
435838.HMPREF0786_01049PF05257(ER)
435838.HMPREF0786_01128(PF06039)(ER)
435838.HMPREF0786_01373(PF06039)
435838.HMPREF0786_01575(PF00185)
435838.HMPREF0786_01876(PF00185)
435838.HMPREF0786_01434(PF00185)
435838.HMPREF0786_01433(PF00185)
435838.HMPREF0786_02013(PF05495)
435838.HMPREF0786_01458(PF00185)
435838.HMPREF0786_01598(PF03059)
435838.HMPREF0786_01803PF05257
435838.HMPREF0786_02345(PF03630)
435838.HMPREF0786_00851PF05257
435838.HMPREF0786_00677(PF09419)
435838.HMPREF0786_00281(PF00185)
435838.HMPREF0786_01391PF05257
435838.HMPREF0786_01530(PF06039)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================