Effective results for Candidatus Pelagibacter sp. HTCC7211 (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 18 proteins (0 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
439493.PB7211_770(PF01571) (PF08669)mitochondrial; (mitochondrial)
439493.PB7211_767(PF01571) (PF08669)(ER); ER
439493.PB7211_1421(PF01571) (PF08669)mitochondrial
439493.PB7211_472(PF01571) (PF08669)ER
439493.PB7211_1437(PF06455)ER
439493.PB7211_937(PF01571) (PF08669)(ER)
439493.PB7211_1145(PF01571) (PF08669)
439493.PB7211_787(PF01571) (PF08669)
439493.PB7211_436(PF01571) (PF08669)
439493.PB7211_667(PF01571) (PF08669)
439493.PB7211_672(PF01571) (PF08669)
439493.PB7211_1387(PF01571) (PF08669)
439493.PB7211_280(PF01571) (PF08669)
439493.PB7211_995(PF01571) (PF08669)
439493.PB7211_1405(PF01571) (PF08669)
439493.PB7211_846(PF10013)not used
439493.PB7211_454(PF01786)
439493.PB7211_1104(PF03092)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
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