Effective results for Rhodobacterales bacterium Y4I (eggnog40)

Summary

Number of putative secreted proteins: 83
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 83 proteins (2 high, 81 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
439496.RBY4I_3884(PF01571) (PF16350) (PF08669)(ER)
439496.RBY4I_4195(PF01571) (PF16350) (PF08669)ER
439496.RBY4I_1598(PF01571) (PF16350) (PF08669)ER
439496.RBY4I_402(PF01571) (PF08669)(ER)
439496.RBY4I_3366(PF01571) (PF08669)(mitochondrial)
439496.RBY4I_2898(PF01571) (PF08669)(mitochondrial)
439496.RBY4I_420(PF02485)(mitochondrial); plastid
439496.RBY4I_4091(PF02690)ER
439496.RBY4I_2632(PF01571) (PF16350) (PF08669)
439496.RBY4I_1932(PF04325)mitochondrial
439496.RBY4I_3035(PF01527)(mitochondrial)
439496.RBY4I_3101(PF07298)ER
439496.RBY4I_3113(PF13276)(mitochondrial); (plastid)
439496.RBY4I_103(PF02690)ER
439496.RBY4I_1033(PF01571) (PF16350) (PF08669)
439496.RBY4I_2540(PF07298)ER
439496.RBY4I_2300(PF13704)mitochondrial; (plastid)
439496.RBY4I_1546(PF01527)(mitochondrial)
439496.RBY4I_1826(PF01571) (PF16350) (PF08669)
439496.RBY4I_3094(PF13704)mitochondrial
439496.RBY4I_2922(PF02690)ER
439496.RBY4I_3400(PF01571) (PF16350) (PF08669)
439496.RBY4I_1798(PF02690)ER
439496.RBY4I_3430(PF13276)(mitochondrial); (plastid)
439496.RBY4I_671(PF13276)(mitochondrial); (plastid)
439496.RBY4I_2874(PF07298)ER
439496.RBY4I_730(PF13276) (PF13683)
439496.RBY4I_3666(PF13276)mitochondrial; not used
439496.RBY4I_1133(PF13276) (PF13683)
439496.RBY4I_1070(PF01571) (PF08669)
439496.RBY4I_2415(PF03092)(ER)
439496.RBY4I_2962(PF01571) (PF08669)
439496.RBY4I_1999(PF13704)plastid
439496.RBY4I_3160(PF01571) (PF08669)
439496.RBY4I_1687(PF13276) (PF13683)
439496.RBY4I_1199(PF01571) (PF08669)
439496.RBY4I_3822(PF09585)(mitochondrial)
439496.RBY4I_1857(PF13276) (PF13683)
439496.RBY4I_2305(PF13276) (PF13683)
439496.RBY4I_1206(PF13704)(ER)
439496.RBY4I_311(PF13276) (PF13683)
439496.RBY4I_864(PF13276) (PF13683)
439496.RBY4I_2933(PF13276) (PF13683)
439496.RBY4I_789(PF01571) (PF08669)
439496.RBY4I_1101(PF13276) (PF13683)
439496.RBY4I_3188(PF13276) (PF13683)
439496.RBY4I_3195(PF13276) (PF13683)
439496.RBY4I_556(PF01527)
439496.RBY4I_555(PF01527)
439496.RBY4I_3878(PF01527)
439496.RBY4I_2832(PF01527)
439496.RBY4I_419PF11781
439496.RBY4I_3920(PF13704)
439496.RBY4I_284(PF01527)
439496.RBY4I_3937(PF13875)
439496.RBY4I_1413(PF01527)
439496.RBY4I_1696PF03175
439496.RBY4I_1090(PF01527)
439496.RBY4I_3350(PF01527)
439496.RBY4I_1464(PF01527)
439496.RBY4I_3825(PF04325)
439496.RBY4I_1859(PF01527)
439496.RBY4I_2880(PF13683)
439496.RBY4I_3173(PF12255)
439496.RBY4I_3789(PF00102)
439496.RBY4I_1148(PF01527)
439496.RBY4I_648(PF01527)
439496.RBY4I_2845(PF04325)
439496.RBY4I_3311(PF04325)not used
439496.RBY4I_3539(PF09585)
439496.RBY4I_3881(PF01527)
439496.RBY4I_2913(PF11927)
439496.RBY4I_2869(PF01527)
439496.RBY4I_693(PF01527)
439496.RBY4I_566(PF13276)
439496.RBY4I_2472(PF01527)
439496.RBY4I_447(PF02485)
439496.RBY4I_377(PF13582)
439496.RBY4I_3042(PF11927)
439496.RBY4I_2075(PF01527)
439496.RBY4I_1744(PF03538)
439496.RBY4I_2650(PF01527)
439496.RBY4I_2491(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================