Effective results for Rickettsia endosymbiont of Ixodes scapularis (eggnog40)

Summary

Number of putative secreted proteins: 269
- Predicted by T4SEpre: 104
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 204 proteins (177 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
444612.REIS_1704+(PF02074)mitochondrial
444612.REIS_0373+ER
444612.REIS_1702(PF02074)mitochondrial
444612.REIS_0725+ER
444612.REIS_1737(PF01695)(mitochondrial)
444612.REIS_0738+ER
444612.REIS_1985PF02326(ER); ER
444612.REIS_0135(PF01695)(mitochondrial)
444612.REIS_0224(PF01695)(mitochondrial)
444612.REIS_0042PF13358mitochondrial
444612.REIS_0041+PF00872(plastid)
444612.REIS_2031+ER
444612.REIS_0101+ER
444612.REIS_1671(PF01695)(mitochondrial)
444612.REIS_1277+ER
444612.REIS_1075+ER
444612.REIS_0683PF01609mitochondrial
444612.REIS_2018+ER
444612.REIS_0878PF01609mitochondrial
444612.REIS_1911+ER
444612.REIS_1282PF01609mitochondrial
444612.REIS_0251PF01609mitochondrial
444612.REIS_1231PF01609mitochondrial
444612.REIS_1239+ER
444612.REIS_0404+ER
444612.REIS_0531PF03219mitochondrial; (mitochondrial)
444612.REIS_0501PF01609(mitochondrial)
444612.REIS_0291PF01609mitochondrial
444612.REIS_0614(PF01695)(mitochondrial)
444612.REIS_0510+(mitochondrial); mitochondrial
444612.REIS_0355(PF01695)(mitochondrial)
444612.REIS_1396PF01609mitochondrial
444612.REIS_1536(PF01695)(mitochondrial)
444612.REIS_0384+ER
444612.REIS_0704PF01609ER
444612.REIS_0959(PF13592) PF13358
444612.REIS_1537+PF00872
444612.REIS_1703(PF13592) PF13358
444612.REIS_1458+PF00872
444612.REIS_1731(PF13592) PF13358
444612.REIS_1602+PF00872
444612.REIS_0930+PF00872
444612.REIS_1187+(ER)
444612.REIS_1068(PF13592) PF13358
444612.REIS_0336+PF00872
444612.REIS_1055+(PF13328)
444612.REIS_0473+PF00872
444612.REIS_1924+PF00872
444612.REIS_0726+PF00872
444612.REIS_1142+PF00872
444612.REIS_1133+PF00872not used
444612.REIS_1355+PF00872
444612.REIS_2100+(PF13328)
444612.REIS_0415+(PF02902)
444612.REIS_0757(PF13592) PF13358
444612.REIS_2054+PF00872
444612.REIS_1740+PF00872
444612.REIS_1107(PF13592) PF13358
444612.REIS_0512PF13358(ER)
444612.REIS_0517+PF00872
444612.REIS_0353+PF00872
444612.REIS_0778(PF13592) PF13358
444612.REIS_0974+PF00872
444612.REIS_1558+PF00872
444612.REIS_1394(PF13592) PF13358
444612.REIS_1822+(mitochondrial)
444612.REIS_0165(PF13592) PF13358
444612.REIS_1498PF03219(ER)
444612.REIS_1942+PF00872
444612.REIS_0354(PF01695)(plastid)
444612.REIS_0577PF01609
444612.REIS_0575+
444612.REIS_0573+
444612.REIS_1712PF13358
444612.REIS_0171PF13358
444612.REIS_0170+
444612.REIS_0378PF01609
444612.REIS_1120PF01609
444612.REIS_0391PF01609
444612.REIS_0396PF03219
444612.REIS_1621+
444612.REIS_1155+
444612.REIS_0950+
444612.REIS_0352PF00872
444612.REIS_1538PF00872
444612.REIS_0006(PF01695)
444612.REIS_1530(PF02074)
444612.REIS_1020PF01609
444612.REIS_1447PF13358
444612.REIS_0540(PF13328)
444612.REIS_1153+not used
444612.REIS_0812+
444612.REIS_1147PF00872
444612.REIS_1146PF00872
444612.REIS_0035PF01609
444612.REIS_0038PF00872
444612.REIS_0039PF00872
444612.REIS_1030PF13358
444612.REIS_1037+
444612.REIS_1451PF13358
444612.REIS_1457PF00872
444612.REIS_1455PF13358
444612.REIS_1459(PF01715)
444612.REIS_2080PF01609
444612.REIS_2083PF01609
444612.REIS_2082PF01609
444612.REIS_2089+
444612.REIS_0487+
444612.REIS_0150+
444612.REIS_0804PF03219
444612.REIS_1605+
444612.REIS_1601PF00872
444612.REIS_0934PF00872
444612.REIS_0933PF00872
444612.REIS_0932PF00872
444612.REIS_1193+
444612.REIS_1190PF03219not used
444612.REIS_1198PF13358
444612.REIS_1199PF00872
444612.REIS_1280PF01609
444612.REIS_0024PF00872
444612.REIS_1462+
444612.REIS_1460(PF01715)
444612.REIS_1863PF01609
444612.REIS_0104+
444612.REIS_1615PF01609not used
444612.REIS_1616PF01609
444612.REIS_1474PF01609
444612.REIS_1870PF13358
444612.REIS_1872+
444612.REIS_1980PF01609
444612.REIS_1983PF00872
444612.REIS_1982PF00872
444612.REIS_0773PF00872
444612.REIS_0775PF00872
444612.REIS_0759PF13358
444612.REIS_0595+
444612.REIS_0914+
444612.REIS_0820PF00872
444612.REIS_0822PF00872
444612.REIS_1263(PF01695)not used
444612.REIS_0040PF00872not used
444612.REIS_1060PF01609
444612.REIS_1066PF01609
444612.REIS_1081PF00872
444612.REIS_1409+
444612.REIS_1402+
444612.REIS_1557(PF13328)
444612.REIS_1318+
444612.REIS_2033PF01609
444612.REIS_1679PF00872
444612.REIS_0216PF13358
444612.REIS_1095PF01609
444612.REIS_1099PF00872
444612.REIS_1412PF00872
444612.REIS_1411PF00872not used
444612.REIS_1410PF00872
444612.REIS_1301PF01609
444612.REIS_1309PF13358
444612.REIS_1754+
444612.REIS_0684PF01609
444612.REIS_0447PF01609
444612.REIS_0663+
444612.REIS_1799(PF13328)
444612.REIS_0665PF03219
444612.REIS_1244PF13358
444612.REIS_1333PF01609
444612.REIS_1331+
444612.REIS_0476+
444612.REIS_0474PF00872
444612.REIS_1650+
444612.REIS_0277PF01609
444612.REIS_0655PF01609
444612.REIS_0303PF01609
444612.REIS_0877PF01609
444612.REIS_1259+
444612.REIS_1321+
444612.REIS_1926PF13358
444612.REIS_1929+
444612.REIS_0641PF13358
444612.REIS_0867(PF13328)
444612.REIS_0727PF00872
444612.REIS_1631PF01609
444612.REIS_1141PF00872
444612.REIS_0463PF00872
444612.REIS_0464PF01609
444612.REIS_0467PF13358
444612.REIS_0260+
444612.REIS_0318PF01609
444612.REIS_0864+
444612.REIS_0888+
444612.REIS_1686PF00872not used
444612.REIS_1685PF00872
444612.REIS_1680PF00872
444612.REIS_1358PF00872
444612.REIS_1357PF00872
444612.REIS_1916PF01609
444612.REIS_0111+
444612.REIS_0445PF01609
444612.REIS_0634PF00872
444612.REIS_0635PF00872
444612.REIS_1233PF01609
444612.REIS_1232(PF09825)
444612.REIS_1128+
444612.REIS_0747+
444612.REIS_1126+
444612.REIS_1124PF13358
444612.REIS_1349+
444612.REIS_1346+
444612.REIS_0669+
444612.REIS_0534PF13358
444612.REIS_1593+
444612.REIS_1759PF13358
444612.REIS_0335PF00872
444612.REIS_0334PF13358
444612.REIS_1200PF00872
444612.REIS_1113PF01609
444612.REIS_1111PF01609
444612.REIS_1549+
444612.REIS_1374PF01609
444612.REIS_1972+
444612.REIS_2053PF00872not used
444612.REIS_1580+
444612.REIS_0294PF01609
444612.REIS_0616PF01609
444612.REIS_0617(PF01695)
444612.REIS_0343PF01609
444612.REIS_0762PF01609
444612.REIS_0983+
444612.REIS_0987PF13358
444612.REIS_1963PF01609
444612.REIS_0618PF13358
444612.REIS_2044PF13358
444612.REIS_2046PF13358
444612.REIS_0513(PF01695)
444612.REIS_0516PF01609
444612.REIS_0518PF00872
444612.REIS_0285PF03219
444612.REIS_0194PF01609
444612.REIS_0191PF00872
444612.REIS_0192PF00872
444612.REIS_0600PF01609not used
444612.REIS_1482(PF13328)
444612.REIS_0995(PF14328)
444612.REIS_1175PF13358not used
444612.REIS_1176PF00872
444612.REIS_1178PF00872
444612.REIS_1179PF01609
444612.REIS_0977PF01609
444612.REIS_0975PF00872
444612.REIS_1398PF00872
444612.REIS_1399PF00872
444612.REIS_1397PF01609
444612.REIS_1958PF13358
444612.REIS_1765PF01609
444612.REIS_1780+
444612.REIS_0168PF00872
444612.REIS_0169PF00872
444612.REIS_0164PF13358not used
444612.REIS_0166PF00872
444612.REIS_0167PF00872
444612.REIS_0360PF01609
444612.REIS_0389PF13358
444612.REIS_1161+
444612.REIS_1169+
444612.REIS_0949+
444612.REIS_1543PF01609
444612.REIS_1386+
444612.REIS_1943PF00872

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.2 (22/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================