Effective results for Sphaerobacter thermophilus DSM 20745 (eggnog40)

Summary

Number of putative secreted proteins: 76
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 76 proteins (3 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
479434.Sthe_2303(PF02012)ER
479434.Sthe_2938(PF01609)ER; (ER)
479434.Sthe_2454(PF07646)ER
479434.Sthe_0326(PF00163)(mitochondrial)
479434.Sthe_0350(PF01609)ER; (ER)
479434.Sthe_3102(PF02628)(mitochondrial)
479434.Sthe_2213(PF01609)ER; (ER)
479434.Sthe_2439(PF01609)ER; (ER)
479434.Sthe_0010(PF01609)ER; (ER)
479434.Sthe_3117(PF15902)(ER)
479434.Sthe_2779(PF01609)ER; (ER)
479434.Sthe_1779(PF11028)ER
479434.Sthe_2762(PF13579)(mitochondrial)
479434.Sthe_0055(PF01609)ER; (ER)
479434.Sthe_2571(PF01609)ER; (ER)
479434.Sthe_1133(PF14099)ER
479434.Sthe_1132(PF13579)ER
479434.Sthe_1131(PF14099)ER
479434.Sthe_3168(PF02628)ER
479434.Sthe_2360(PF12483)ER
479434.Sthe_1724(PF01609)ER; (ER)
479434.Sthe_0274(PF02538)(ER)
479434.Sthe_3211(PF01609)ER; (ER)
479434.Sthe_3177(PF01609)ER; (ER)
479434.Sthe_3193(PF02628)(mitochondrial)
479434.Sthe_0868PF11601ER
479434.Sthe_2826(PF01609)ER; (ER)
479434.Sthe_0475(PF01609)ER; (ER)
479434.Sthe_1267(PF08031)(mitochondrial)
479434.Sthe_2250(PF01609)ER; (ER)
479434.Sthe_2784(PF01609)ER; (ER)
479434.Sthe_1063(PF00163)mitochondrial
479434.Sthe_0117(PF01609)ER; (ER)
479434.Sthe_1647(PF08031)(plastid)
479434.Sthe_1568(PF00025)(mitochondrial)
479434.Sthe_1742(PF15902) (PF02012)
479434.Sthe_2890(PF02538)(ER)
479434.Sthe_2958(PF02012)(mitochondrial)
479434.Sthe_2757(PF13579)(ER)
479434.Sthe_1326(PF13579)(mitochondrial)
479434.Sthe_2276(PF15902)
479434.Sthe_3498(PF02538)
479434.Sthe_2871(PF16952)
479434.Sthe_2427(PF01609)
479434.Sthe_1358(PF03576)
479434.Sthe_0354(PF08031)
479434.Sthe_0009(PF02538)
479434.Sthe_1748(PF00643)
479434.Sthe_0160(PF01609)
479434.Sthe_1570(PF03069)
479434.Sthe_0808(PF11028)
479434.Sthe_3449(PF13579)
479434.Sthe_2525(PF08031)
479434.Sthe_0634(PF04343)
479434.Sthe_2891(PF02538)
479434.Sthe_2894(PF03069)
479434.Sthe_1706(PF13579)
479434.Sthe_1129(PF15902)
479434.Sthe_1955(PF03576)
479434.Sthe_2579(PF08031)
479434.Sthe_0849(PF13579)
479434.Sthe_0663(PF13579)
479434.Sthe_0061(PF04343)
479434.Sthe_1828(PF04343)
479434.Sthe_1827(PF04343)
479434.Sthe_1850(PF04423)
479434.Sthe_1024PF03464
479434.Sthe_1275(PF03576)
479434.Sthe_1273(PF08031)
479434.Sthe_2331PF10343
479434.Sthe_2482(PF02538)
479434.Sthe_2487(PF03069)
479434.Sthe_2468(PF03069)
479434.Sthe_2668(PF15902)
479434.Sthe_3035(PF14330)
479434.Sthe_1070(PF03576)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================