Effective results for Thermus aquaticus Y51MC23 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 34 proteins (5 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
498848.TaqDRAFT_4417				(PF01609)	ER
498848.TaqDRAFT_3407				(PF01875)	(ER)
498848.TaqDRAFT_3338				PF08317	ER
498848.TaqDRAFT_3130				(PF01609)	mitochondrial
498848.TaqDRAFT_3904				PF16575	(mitochondrial); (plastid)
498848.TaqDRAFT_5357				(PF01609)	mitochondrial
498848.TaqDRAFT_3169				(PF01609)	ER
498848.TaqDRAFT_5509				PF03351	ER
498848.TaqDRAFT_4351				(PF01609)	(ER); ER
498848.TaqDRAFT_4927				(PF01609)
498848.TaqDRAFT_3199				(PF01609)
498848.TaqDRAFT_3461				(PF01442)
498848.TaqDRAFT_3181				(PF01609)
498848.TaqDRAFT_4252				PF04098
498848.TaqDRAFT_4278				(PF01991)
498848.TaqDRAFT_4270				(PF01609)
498848.TaqDRAFT_4472				(PF12862)
498848.TaqDRAFT_4053				(PF01609)
498848.TaqDRAFT_3429				(PF00025)
498848.TaqDRAFT_4683				(PF08271)	not used
498848.TaqDRAFT_3225				(PF01609)
498848.TaqDRAFT_3690				(PF07798)
498848.TaqDRAFT_3978				(PF01875)
498848.TaqDRAFT_3804				(PF01609)
498848.TaqDRAFT_4007				(PF01609)
498848.TaqDRAFT_5194				(PF01609)
498848.TaqDRAFT_4100				(PF01609)
498848.TaqDRAFT_4104				(PF07798)
498848.TaqDRAFT_4612				(PF01609)
498848.TaqDRAFT_3391				PF04098
498848.TaqDRAFT_4605				(PF04930)
498848.TaqDRAFT_3838				(PF01609)
498848.TaqDRAFT_3837				(PF01609)
498848.TaqDRAFT_4953				(PF01609)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================