Effective results for Clostridium hiranonis DSM 13275 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (1 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
500633.CLOHIR_02139(PF00163)mitochondrial
500633.CLOHIR_02131(PF09991)ER
500633.CLOHIR_01603(PF00163)(mitochondrial)
500633.CLOHIR_01986(PF12821)ER
500633.CLOHIR_02262(PF09991)ER
500633.CLOHIR_00213(PF01693)mitochondrial
500633.CLOHIR_01783(PF12821)(ER)
500633.CLOHIR_01002(PF12821)ER
500633.CLOHIR_00614(PF16189) (PF16188)(mitochondrial)
500633.CLOHIR_00056(PF11070)ER
500633.CLOHIR_00063(PF01228) (PF02901)
500633.CLOHIR_00931(PF13304)(mitochondrial)
500633.CLOHIR_00726(PF01228) (PF02901)
500633.CLOHIR_00590(PF16189) (PF16188)
500633.CLOHIR_00115(PF13167)(mitochondrial)
500633.CLOHIR_00977(PF16189) (PF16188)
500633.CLOHIR_00400(PF01228) (PF02901)
500633.CLOHIR_00436(PF16189) (PF16188)
500633.CLOHIR_01853(PF01228) (PF02901)
500633.CLOHIR_00496(PF01228) (PF02901)
500633.CLOHIR_00061(PF13304)
500633.CLOHIR_00930(PF13304)
500633.CLOHIR_00934(PF13304)
500633.CLOHIR_00918(PF07516)
500633.CLOHIR_00031(PF07516)
500633.CLOHIR_00032(PF07516)not used
500633.CLOHIR_00963PF04572
500633.CLOHIR_01507(PF13304)
500633.CLOHIR_02089(PF13167)not used
500633.CLOHIR_01409(PF10544)
500633.CLOHIR_02213(PF12640)
500633.CLOHIR_00443(PF01693)
500633.CLOHIR_02207(PF14512)
500633.CLOHIR_02041(PF14512)
500633.CLOHIR_00950(PF13304)
500633.CLOHIR_01860(PF13167)
500633.CLOHIR_00611(PF10544)
500633.CLOHIR_00058(PF00958)
500633.CLOHIR_00057(PF00958)
500633.CLOHIR_00878(PF01991)
500633.CLOHIR_00519(PF13304)
500633.CLOHIR_00927(PF13304)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================