Effective results for Kosmotoga olearia TBF 19.5.1 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 61 proteins (2 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
521045.Kole_1797				(PF00665)	(mitochondrial)
521045.Kole_1238				(PF00665)	mitochondrial; (mitochondrial)
521045.Kole_2021				(PF00162)	(mitochondrial)
521045.Kole_0333				(PF00665)	mitochondrial; (mitochondrial)
521045.Kole_0518				(PF12483)	ER
521045.Kole_1019				(PF01695)	(mitochondrial); mitochondrial
521045.Kole_1047				(PF01695)	(mitochondrial); mitochondrial
521045.Kole_0231				(PF13173)	ER
521045.Kole_1051				(PF01695)	(mitochondrial); mitochondrial
521045.Kole_0482				(PF16317)	ER
521045.Kole_1293				(PF00665)	(mitochondrial)
521045.Kole_1080				(PF10142)	ER
521045.Kole_0057				(PF01695)	(mitochondrial); mitochondrial
521045.Kole_1504				(PF00665)	(mitochondrial)
521045.Kole_0784				(PF00665)	(plastid)
521045.Kole_1787				(PF00665)	(ER)
521045.Kole_0066				(PF00665)	(mitochondrial)
521045.Kole_0628				(PF00665)	(plastid)
521045.Kole_0766				(PF00665)	(plastid)
521045.Kole_0490				(PF01637)	(mitochondrial)
521045.Kole_1720				(PF07837) (PF02971)
521045.Kole_0260				PF12719
521045.Kole_1317				(PF13173)
521045.Kole_1136				(PF00665)
521045.Kole_1259				(PF13173)
521045.Kole_1796				(PF01695)
521045.Kole_1824				(PF00665)
521045.Kole_0079				(PF13173)
521045.Kole_0073				(PF13173)
521045.Kole_0074				(PF13173)
521045.Kole_1301				(PF01637)
521045.Kole_1300				(PF01637)
521045.Kole_0525				(PF00665)
521045.Kole_0526				(PF01695)
521045.Kole_0069				(PF13173)
521045.Kole_0065				(PF01695)
521045.Kole_1423				(PF00665)
521045.Kole_1426				(PF01695)
521045.Kole_1427				(PF00665)
521045.Kole_0335				(PF00665)
521045.Kole_2006				(PF13173)
521045.Kole_2008				(PF01637)
521045.Kole_0364				(PF00665)
521045.Kole_1018				(PF00665)
521045.Kole_0995				(PF00162)
521045.Kole_1146				(PF03266)
521045.Kole_1048				(PF00665)
521045.Kole_0976				(PF09752)
521045.Kole_1825				(PF00665)
521045.Kole_0237				(PF09419)
521045.Kole_1052				(PF00665)
521045.Kole_1948				PF12765
521045.Kole_1069				(PF00862)
521045.Kole_1294				(PF01695)
521045.Kole_1279				(PF01695)
521045.Kole_1278				(PF00665)
521045.Kole_1670				(PF00665)
521045.Kole_1505				(PF00665)
521045.Kole_1507				(PF01695)
521045.Kole_1506				(PF01695)
521045.Kole_0058				(PF00665)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================