Effective results for Corynebacterium accolens ATCC 49725 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525260.HMPREF0276_0973(PF08310)(mitochondrial)
525260.HMPREF0276_0169(PF08310)ER; (ER)
525260.HMPREF0276_2316(PF13276)(mitochondrial)
525260.HMPREF0276_2331(PF13683)(mitochondrial)
525260.HMPREF0276_0499(PF08310)(ER); ER
525260.HMPREF0276_0519(PF13276)(mitochondrial)
525260.HMPREF0276_0986(PF13276)mitochondrial
525260.HMPREF0276_0895(PF03803)(plastid)
525260.HMPREF0276_0130(PF01195)(plastid)
525260.HMPREF0276_2328(PF13276)(mitochondrial)
525260.HMPREF0276_0532(PF13276)(mitochondrial)
525260.HMPREF0276_1148PF08213not used
525260.HMPREF0276_0727(PF13683)
525260.HMPREF0276_0899(PF05495)
525260.HMPREF0276_0945PF01490
525260.HMPREF0276_0374(PF13683)
525260.HMPREF0276_0373(PF13276)
525260.HMPREF0276_1569(PF13276)
525260.HMPREF0276_1187(PF13683)
525260.HMPREF0276_0487(PF08310)
525260.HMPREF0276_2330(PF13276)
525260.HMPREF0276_1010(PF13683)
525260.HMPREF0276_0120(PF01195)
525260.HMPREF0276_2323(PF13683)
525260.HMPREF0276_2320(PF13276)
525260.HMPREF0276_0035(PF11070)
525260.HMPREF0276_2125(PF13683)
525260.HMPREF0276_1113(PF13276)
525260.HMPREF0276_0952PF01490

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================