Effective results for Corynebacterium pseudogenitalium ATCC 33035 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 61 proteins (1 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525264.HMPREF0305_11935(PF00665) (PF13276)mitochondrial
525264.HMPREF0305_12349(PF00665) (PF13276)mitochondrial
525264.HMPREF0305_11718(PF00665) (PF13276)(mitochondrial)
525264.HMPREF0305_11668(PF11070)ER
525264.HMPREF0305_11563(PF00665) (PF13276)(mitochondrial)
525264.HMPREF0305_11548(PF01195)ER
525264.HMPREF0305_11104(PF00665) (PF13276)(mitochondrial)
525264.HMPREF0305_10207(PF13276)(mitochondrial)
525264.HMPREF0305_12236(PF13936) (PF00665)(plastid)
525264.HMPREF0305_10812(PF13936) (PF00665)(plastid)
525264.HMPREF0305_10629(PF13936) (PF00665)
525264.HMPREF0305_12424(PF00665) (PF13276)
525264.HMPREF0305_11586(PF00665) (PF13276)
525264.HMPREF0305_11589(PF00665) (PF13276)
525264.HMPREF0305_11695(PF00665) (PF13276)
525264.HMPREF0305_10503(PF13936) (PF00665)
525264.HMPREF0305_10869(PF00665) (PF13276)
525264.HMPREF0305_11763(PF00665) (PF13276)
525264.HMPREF0305_10054(PF00665) (PF13276)
525264.HMPREF0305_12175(PF05277)(ER)
525264.HMPREF0305_12357(PF00665) (PF13276)
525264.HMPREF0305_12184(PF00665) (PF13276)
525264.HMPREF0305_12182(PF00665) (PF13276)
525264.HMPREF0305_12434(PF00665) (PF13276)
525264.HMPREF0305_12407(PF00665) (PF13276)
525264.HMPREF0305_11637(PF13936) (PF00665)
525264.HMPREF0305_11864(PF13936) (PF00665)
525264.HMPREF0305_11929(PF13936) (PF00665)
525264.HMPREF0305_11719(PF01527)
525264.HMPREF0305_11665(PF00665)
525264.HMPREF0305_11934(PF01527)
525264.HMPREF0305_12477PF02407
525264.HMPREF0305_10635(PF14683)
525264.HMPREF0305_12425(PF01527)
525264.HMPREF0305_11587(PF01527)
525264.HMPREF0305_11588(PF01527)
525264.HMPREF0305_11103(PF01527)
525264.HMPREF0305_11694(PF01527)
525264.HMPREF0305_10614(PF01490)
525264.HMPREF0305_11568(PF13276)
525264.HMPREF0305_11564(PF01527)
525264.HMPREF0305_11167(PF09683)
525264.HMPREF0305_11762(PF01527)
525264.HMPREF0305_10092(PF03803)
525264.HMPREF0305_10098(PF05495)
525264.HMPREF0305_11574(PF01195)
525264.HMPREF0305_11556(PF13276)
525264.HMPREF0305_10594(PF14078)
525264.HMPREF0305_10220(PF00665)
525264.HMPREF0305_12356(PF01527)
525264.HMPREF0305_12350(PF01527)
525264.HMPREF0305_11530(PF00665)
525264.HMPREF0305_12185(PF01527)
525264.HMPREF0305_12183(PF01527)
525264.HMPREF0305_12433(PF01527)
525264.HMPREF0305_10870(PF01527)
525264.HMPREF0305_12401(PF01527)
525264.HMPREF0305_12402(PF00665)
525264.HMPREF0305_12406(PF01527)
525264.HMPREF0305_11268(PF14078)
525264.HMPREF0305_11078(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================