Effective results for Clostridium botulinum E1 str. BoNT E Beluga (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 63 proteins (18 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
536233.CLO_0200				(PF13127)	ER
536233.CLO_0305				PF12733	ER
536233.CLO_0304				PF12733	ER
536233.CLO_0303				PF16709	ER; (ER)
536233.CLO_0314				PF12733	ER
536233.CLO_0311				PF12733	ER
536233.CLO_0312				PF12733	ER; (ER)
536233.CLO_0313				PF12733	ER
536233.CLO_2790				(PF14566)	ER
536233.CLO_0339				PF12733	(ER); ER
536233.CLO_3179				(PF03266)	(mitochondrial)
536233.CLO_0030				PF03188	ER
536233.CLO_1751				(PF02906) (PF02256)
536233.CLO_2002				(PF09370)	(mitochondrial)
536233.CLO_2000				(PF09370)	(mitochondrial)
536233.CLO_1976				(PF02906) (PF02256)
536233.CLO_1486				(PF02906) (PF02256)
536233.CLO_3757				(PF02906) (PF02256)
536233.CLO_1997				(PF14691)	(mitochondrial)
536233.CLO_2770				(PF02915)
536233.CLO_2776				(PF14691)
536233.CLO_1868				(PF00959)
536233.CLO_0903				(PF00959)
536233.CLO_0275				PF13151	not used
536233.CLO_1474				(PF14691)
536233.CLO_3810				(PF00165)
536233.CLO_2781				(PF07892)
536233.CLO_0786				(PF01991)
536233.CLO_3783				(PF07892)
536233.CLO_0328				(PF14691)
536233.CLO_3317				(PF01633)
536233.CLO_3319				(PF01633)
536233.CLO_0662				(PF00959)
536233.CLO_0593				(PF02915)
536233.CLO_1114				PF13151
536233.CLO_1510				(PF01487)
536233.CLO_1512				(PF12513)
536233.CLO_2650				PF06597
536233.CLO_2470				PF04184
536233.CLO_0435				(PF02915)
536233.CLO_0343				(PF01633)
536233.CLO_1697				(PF02915)
536233.CLO_1103				PF13151
536233.CLO_2647				PF06597
536233.CLO_2648				PF06597
536233.CLO_0515				(PF02732)
536233.CLO_3730				(PF12646)
536233.CLO_2070				(PF02906)
536233.CLO_0564				(PF00959)
536233.CLO_1584				(PF00959)
536233.CLO_1015				PF13151
536233.CLO_3406				(PF02906)
536233.CLO_3144				(PF14691)
536233.CLO_1960				(PF08950)
536233.CLO_0815				(PF02915)
536233.CLO_3392				(PF09811)
536233.CLO_0944				PF13151
536233.CLO_1547				(PF02732)
536233.CLO_0488				(PF14691)
536233.CLO_1441				(PF00959)
536233.CLO_0451				(PF02915)
536233.CLO_1752				(PF14691)
536233.CLO_3100				(PF01487)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================