Effective results for Neisseria subflava NJ9703 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 15 proteins (1 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546268.NEISUBOT_04390(PF09511)(mitochondrial)
546268.NEISUBOT_03097(PF03083)(ER)
546268.NEISUBOT_05653(PF05593)not used
546268.NEISUBOT_05656(PF05593)not used
546268.NEISUBOT_04426(PF05593)
546268.NEISUBOT_03214(PF03083)
546268.NEISUBOT_03987(PF11969)
546268.NEISUBOT_05485(PF05593)not used
546268.NEISUBOT_05635(PF05593)
546268.NEISUBOT_04976(PF05593)
546268.NEISUBOT_04834(PF05593)
546268.NEISUBOT_04482(PF16804)
546268.NEISUBOT_05664PF08333not used
546268.NEISUBOT_05670(PF05593)not used
546268.NEISUBOT_05073(PF00755)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================