Effective results for Prevotella melaninogenica ATCC 25845 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 44 proteins (2 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553174.HMPREF0659_A7183(PF16353) (PF02929)ER
553174.HMPREF0659_A6982(PF16353) (PF02929)ER
553174.HMPREF0659_A7284(PF03644)ER
553174.HMPREF0659_A7283(PF03644)ER
553174.HMPREF0659_A7262(PF16353) (PF02929)(mitochondrial)
553174.HMPREF0659_A6609(PF00328)ER
553174.HMPREF0659_A6895(PF16313)ER
553174.HMPREF0659_A5443(PF16313)(ER)
553174.HMPREF0659_A5444(PF16313)ER
553174.HMPREF0659_A6065(PF03051)(ER)
553174.HMPREF0659_A5500PF16269(ER)
553174.HMPREF0659_A5411(PF03092)ER
553174.HMPREF0659_A5959(PF03051)ER
553174.HMPREF0659_A6552(PF16313)ER
553174.HMPREF0659_A6551(PF16313)ER
553174.HMPREF0659_A7041(PF12256)ER
553174.HMPREF0659_A6011(PF00328)ER
553174.HMPREF0659_A6010(PF09825)ER
553174.HMPREF0659_A6723(PF02971) (PF07837)
553174.HMPREF0659_A5826(PF05970) (PF02689)
553174.HMPREF0659_A6095(PF13155)(plastid)
553174.HMPREF0659_A6062(PF16353) (PF02929)
553174.HMPREF0659_A5824(PF01715)
553174.HMPREF0659_A6446(PF16011)
553174.HMPREF0659_A6904(PF03630)
553174.HMPREF0659_A5934(PF01715)
553174.HMPREF0659_A6521(PF16314)
553174.HMPREF0659_A6249(PF13086)
553174.HMPREF0659_A6435(PF07693)
553174.HMPREF0659_A6344(PF05693)
553174.HMPREF0659_A6641PF13854
553174.HMPREF0659_A5737(PF13155)
553174.HMPREF0659_A5987(PF13086)
553174.HMPREF0659_A6297(PF13086)
553174.HMPREF0659_A5223(PF05970)
553174.HMPREF0659_A5717(PF07693)
553174.HMPREF0659_A6370(PF04383)
553174.HMPREF0659_A6968(PF07693)
553174.HMPREF0659_A7387(PF04383)
553174.HMPREF0659_A7045(PF12256)
553174.HMPREF0659_A6401(PF03051)
553174.HMPREF0659_A6128(PF13155)
553174.HMPREF0659_A6233(PF13151)
553174.HMPREF0659_A5751(PF13155)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================