Effective results for Bifidobacterium gallicum DSM 20093 = LMG 11596 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 49 proteins (6 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
561180.BIFGAL_03093(PF12323) (PF07282)mitochondrial
561180.BIFGAL_04149(PF12323) (PF07282)(mitochondrial); (plastid)
561180.BIFGAL_03113(PF12323) (PF07282)mitochondrial
561180.BIFGAL_03931(PF12323) (PF07282)(mitochondrial); (plastid)
561180.BIFGAL_03963(PF05257)ER; (ER)
561180.BIFGAL_02635(PF12323) (PF07282)(mitochondrial)
561180.BIFGAL_03728(PF05257)(mitochondrial); (plastid)
561180.BIFGAL_03433(PF07282)mitochondrial
561180.BIFGAL_03491(PF06541)ER
561180.BIFGAL_02514PF06422mitochondrial
561180.BIFGAL_03482(PF03602)mitochondrial
561180.BIFGAL_04267PF03423ER
561180.BIFGAL_02615(PF12323) (PF07282)
561180.BIFGAL_03534(PF12323) (PF07282)
561180.BIFGAL_03404(PF12323) (PF07282)
561180.BIFGAL_03841(PF07282)(mitochondrial)
561180.BIFGAL_04368(PF12323) (PF07282)
561180.BIFGAL_03925(PF12323) (PF07282)
561180.BIFGAL_03615(PF05257)(plastid)
561180.BIFGAL_03442(PF12323) (PF07282)
561180.BIFGAL_03427(PF12323) (PF07282)
561180.BIFGAL_03952(PF12323) (PF07282)
561180.BIFGAL_02821(PF12323) (PF07282)
561180.BIFGAL_04327(PF07282)(mitochondrial)
561180.BIFGAL_03988(PF07282)not used
561180.BIFGAL_04244(PF01250)
561180.BIFGAL_03434(PF12323)
561180.BIFGAL_04266PF03423
561180.BIFGAL_04466(PF07282)not used
561180.BIFGAL_02656(PF06541)
561180.BIFGAL_04378(PF14336)
561180.BIFGAL_02672PF03423
561180.BIFGAL_04120(PF03602)
561180.BIFGAL_04052(PF06541)
561180.BIFGAL_03905(PF08354)
561180.BIFGAL_03640(PF03602)
561180.BIFGAL_02500(PF07282)not used
561180.BIFGAL_04130(PF07282)
561180.BIFGAL_02795(PF07282)
561180.BIFGAL_03028(PF05704)
561180.BIFGAL_02991(PF07282)
561180.BIFGAL_03154(PF07282)
561180.BIFGAL_03146(PF05257)
561180.BIFGAL_04440(PF07282)not used
561180.BIFGAL_04442(PF12323)
561180.BIFGAL_04471(PF01250)not used
561180.BIFGAL_04268PF03423
561180.BIFGAL_03162(PF07282)
561180.BIFGAL_03086PF04916

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================