Effective results for Bilophila wadsworthia 3_1_6 (eggnog40)

Summary

Number of putative secreted proteins: 206
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 206 proteins (6 high, 200 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
563192.HMPREF0179_00434(PF01970)ER
563192.HMPREF0179_00214(PF01970)(ER)
563192.HMPREF0179_00749(PF03553)ER
563192.HMPREF0179_03264(PF03553)ER
563192.HMPREF0179_00001(PF00158)ER
563192.HMPREF0179_01291(PF02629) (PF13607)(plastid)
563192.HMPREF0179_01988(PF00939)ER
563192.HMPREF0179_03584(PF01558)mitochondrial; (mitochondrial)
563192.HMPREF0179_03296(PF01558)(mitochondrial)
563192.HMPREF0179_01190(PF00036)ER
563192.HMPREF0179_00579(PF13597)(mitochondrial)
563192.HMPREF0179_00804(PF02754)(mitochondrial)
563192.HMPREF0179_03129(PF00939)ER; (ER)
563192.HMPREF0179_03128PF05935ER
563192.HMPREF0179_01612(PF07969)ER
563192.HMPREF0179_02893(PF01970)ER
563192.HMPREF0179_02890(PF00158)ER
563192.HMPREF0179_01817(PF03553)ER
563192.HMPREF0179_02552(PF13187)mitochondrial
563192.HMPREF0179_00739PF01591(mitochondrial)
563192.HMPREF0179_00608(PF03553)(ER)
563192.HMPREF0179_01800(PF14691) (PF02754) (PF13534)
563192.HMPREF0179_01709(PF00158)(ER)
563192.HMPREF0179_00057(PF00939)ER
563192.HMPREF0179_02572(PF01970)ER
563192.HMPREF0179_01480(PF00939)ER
563192.HMPREF0179_00534(PF03553)ER
563192.HMPREF0179_01224(PF13187)(mitochondrial)
563192.HMPREF0179_00526(PF02415)ER
563192.HMPREF0179_00528(PF00158)mitochondrial; (mitochondrial)
563192.HMPREF0179_03372(PF00939)ER
563192.HMPREF0179_00865(PF13023)mitochondrial; (mitochondrial)
563192.HMPREF0179_00466(PF00158)ER; plastid
563192.HMPREF0179_00507(PF00158)ER
563192.HMPREF0179_02831(PF01094)ER
563192.HMPREF0179_03233(PF14691)(mitochondrial)
563192.HMPREF0179_01872(PF10662)(mitochondrial)
563192.HMPREF0179_01063(PF07969)ER
563192.HMPREF0179_00937(PF03601)ER
563192.HMPREF0179_00680(PF02629)mitochondrial
563192.HMPREF0179_01654(PF10662)(ER)
563192.HMPREF0179_01984(PF00158) (PF09370)
563192.HMPREF0179_03464PF14700 (PF00940)
563192.HMPREF0179_01160(PF07931) (PF07685)not used
563192.HMPREF0179_00586(PF03601)(ER)
563192.HMPREF0179_03295(PF01855) (PF13187)
563192.HMPREF0179_01626(PF01558) (PF01855)
563192.HMPREF0179_00022(PF07931) (PF07685)not used
563192.HMPREF0179_02140(PF01970)(ER)
563192.HMPREF0179_02149(PF01228) (PF02901)
563192.HMPREF0179_00639(PF01228) (PF02901)
563192.HMPREF0179_01153(PF01228) (PF02901)
563192.HMPREF0179_01399(PF00158)(ER)
563192.HMPREF0179_03099(PF01228) (PF02901)
563192.HMPREF0179_03633(PF00158)(ER)
563192.HMPREF0179_00540(PF01558) (PF01855)
563192.HMPREF0179_02578(PF00158)(mitochondrial)
563192.HMPREF0179_00448(PF14691) (PF13187)
563192.HMPREF0179_02826(PF02629)(ER)
563192.HMPREF0179_00477(PF01228) (PF02901)
563192.HMPREF0179_00479(PF01228) (PF02901)
563192.HMPREF0179_00091(PF01558) (PF01855)
563192.HMPREF0179_02799(PF02754) (PF13534)
563192.HMPREF0179_00425(PF02754) (PF13534)
563192.HMPREF0179_01670(PF03553)(ER)
563192.HMPREF0179_01412(PF00158)(ER)
563192.HMPREF0179_01326(PF14691) (PF13187)
563192.HMPREF0179_01668(PF03553)(ER)
563192.HMPREF0179_00202(PF07969)(plastid)
563192.HMPREF0179_03302(PF00158)
563192.HMPREF0179_02304(PF13187)
563192.HMPREF0179_00321(PF00158)
563192.HMPREF0179_02981(PF07720)
563192.HMPREF0179_01985(PF09370)
563192.HMPREF0179_01987(PF09370)
563192.HMPREF0179_03470PF05935
563192.HMPREF0179_03317(PF00158)
563192.HMPREF0179_03314(PF01597)
563192.HMPREF0179_00634(PF02754)
563192.HMPREF0179_00637(PF00158)
563192.HMPREF0179_02194(PF13187)
563192.HMPREF0179_02736(PF14691)
563192.HMPREF0179_00351(PF07969)
563192.HMPREF0179_02848(PF00158)
563192.HMPREF0179_02845(PF01970)
563192.HMPREF0179_02844(PF07969)
563192.HMPREF0179_03269(PF01970)
563192.HMPREF0179_00003(PF07969)
563192.HMPREF0179_03466(PF01597)
563192.HMPREF0179_01295(PF02754)
563192.HMPREF0179_02212(PF00158)
563192.HMPREF0179_02218(PF00158)
563192.HMPREF0179_02504(PF02754)
563192.HMPREF0179_01184(PF00158)
563192.HMPREF0179_01168(PF00158)
563192.HMPREF0179_03582(PF01855)
563192.HMPREF0179_03586(PF13607)
563192.HMPREF0179_00764(PF00158)
563192.HMPREF0179_03297(PF07969)
563192.HMPREF0179_03293(PF13607)
563192.HMPREF0179_02531(PF09825)
563192.HMPREF0179_02711(PF00158)
563192.HMPREF0179_03660(PF13551)
563192.HMPREF0179_03668(PF07685)
563192.HMPREF0179_00578(PF13597)not used
563192.HMPREF0179_00399(PF13597)
563192.HMPREF0179_00021(PF07685)
563192.HMPREF0179_00020(PF07685)
563192.HMPREF0179_03448(PF13597)
563192.HMPREF0179_02143(PF00158)
563192.HMPREF0179_01149(PF00158)
563192.HMPREF0179_01148(PF02754)
563192.HMPREF0179_00703(PF00158)
563192.HMPREF0179_02776(PF01597)
563192.HMPREF0179_01158(PF07685)
563192.HMPREF0179_03608PF05935
563192.HMPREF0179_01397(PF02910)
563192.HMPREF0179_01391(PF13551)
563192.HMPREF0179_03098(PF00158)
563192.HMPREF0179_01805(PF00158)
563192.HMPREF0179_00839(PF03601)
563192.HMPREF0179_00541(PF13607)
563192.HMPREF0179_00058(PF02910)
563192.HMPREF0179_00059(PF14691)
563192.HMPREF0179_03151(PF01880)
563192.HMPREF0179_03393(PF07969)
563192.HMPREF0179_02285PF05935
563192.HMPREF0179_02575(PF00158)
563192.HMPREF0179_01481(PF02910)
563192.HMPREF0179_01482(PF13187)
563192.HMPREF0179_02118(PF07685)
563192.HMPREF0179_01712(PF07969)
563192.HMPREF0179_01713(PF13551)
563192.HMPREF0179_03622(PF01855)
563192.HMPREF0179_03623(PF13607)
563192.HMPREF0179_03621(PF01558)
563192.HMPREF0179_00532(PF00158)
563192.HMPREF0179_00531(PF00939)
563192.HMPREF0179_00530(PF02910)
563192.HMPREF0179_00537(PF13187)
563192.HMPREF0179_00536(PF02910)
563192.HMPREF0179_01220(PF00158)
563192.HMPREF0179_03184(PF13607)
563192.HMPREF0179_03182(PF00158)
563192.HMPREF0179_02568(PF00939)
563192.HMPREF0179_02565(PF02629)
563192.HMPREF0179_02632(PF00158)
563192.HMPREF0179_00529(PF13187)
563192.HMPREF0179_01217(PF01855)
563192.HMPREF0179_01218(PF01558)
563192.HMPREF0179_01456(PF14691)
563192.HMPREF0179_01454(PF02754)
563192.HMPREF0179_00274(PF07969)
563192.HMPREF0179_02969(PF00158)
563192.HMPREF0179_02353(PF02754)
563192.HMPREF0179_02138(PF00158)
563192.HMPREF0179_00514(PF00158)
563192.HMPREF0179_00516(PF01970)
563192.HMPREF0179_01207(PF02910)
563192.HMPREF0179_00465(PF07969)
563192.HMPREF0179_00648(PF13534)
563192.HMPREF0179_02820(PF07969)
563192.HMPREF0179_03202(PF05693)
563192.HMPREF0179_03348(PF00158)
563192.HMPREF0179_00872(PF02516)
563192.HMPREF0179_00871(PF12437)
563192.HMPREF0179_02657(PF03601)
563192.HMPREF0179_00504(PF07969)
563192.HMPREF0179_02902(PF07969)
563192.HMPREF0179_03529(PF13023)
563192.HMPREF0179_02832(PF00158)
563192.HMPREF0179_00092(PF00158)
563192.HMPREF0179_03232(PF13187)
563192.HMPREF0179_01877(PF00158)
563192.HMPREF0179_01917(PF00158)
563192.HMPREF0179_02249(PF13534)
563192.HMPREF0179_02245(PF01880)
563192.HMPREF0179_02243(PF02910)
563192.HMPREF0179_00226(PF00158)
563192.HMPREF0179_03323(PF07969)
563192.HMPREF0179_02259(PF00158)
563192.HMPREF0179_02250(PF02754)
563192.HMPREF0179_02252(PF13534)
563192.HMPREF0179_02498(PF12437)
563192.HMPREF0179_01677(PF01970)
563192.HMPREF0179_01671(PF07969)
563192.HMPREF0179_01413(PF07969)
563192.HMPREF0179_01411(PF14691)
563192.HMPREF0179_01410(PF02910)
563192.HMPREF0179_01415(PF00158)
563192.HMPREF0179_00417(PF02629)
563192.HMPREF0179_00419(PF01558)
563192.HMPREF0179_00306(PF01597)
563192.HMPREF0179_00302(PF01970)
563192.HMPREF0179_02817(PF00158)
563192.HMPREF0179_01894(PF03553)
563192.HMPREF0179_02313(PF13023)
563192.HMPREF0179_01068(PF01558)
563192.HMPREF0179_01069(PF00158)
563192.HMPREF0179_01062(PF07969)
563192.HMPREF0179_01067(PF01855)
563192.HMPREF0179_00421(PF01855)
563192.HMPREF0179_01245(PF02754)
563192.HMPREF0179_00335(PF00158)
563192.HMPREF0179_00113(PF00939)
563192.HMPREF0179_03240(PF13551)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================