Effective results for Wolbachia endosymbiont of Culex quinquefasciatus Pel (eggnog40)

Summary

Number of putative secreted proteins: 143
- Predicted by T4SEpre: 109
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 68 proteins (56 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
570417.WPa_0292PF12796 PF00023 PF13857(mitochondrial)
570417.WPa_0410+PF12796 PF13857 (PF13637)
570417.WPa_0340PF12796 PF00023(mitochondrial)
570417.WPa_0730PF12796 PF00023(mitochondrial)
570417.WPa_0299PF12796 PF00023(mitochondrial)
570417.WPa_0113+(mitochondrial)
570417.WPa_0413PF12796 PF00023(mitochondrial)
570417.WPa_0163+mitochondrial
570417.WPa_0112PF13606(mitochondrial)
570417.WPa_0599+ER
570417.WPa_1339+ER
570417.WPa_0620+ER
570417.WPa_0621+ER
570417.WPa_1053+ER
570417.WPa_0944+ER
570417.WPa_0531+(mitochondrial)
570417.WPa_1280+ER
570417.WPa_1213+ER
570417.WPa_0954+mitochondrial
570417.WPa_0766+(ER)
570417.WPa_0197+ER
570417.WPa_1361+mitochondrial
570417.WPa_0311(PF01343)(mitochondrial)
570417.WPa_0100+ER
570417.WPa_1378PF12796 PF00023 (PF13637)
570417.WPa_0218PF12796(ER)
570417.WPa_0217PF12796(mitochondrial)
570417.WPa_1070+(mitochondrial)
570417.WPa_0677PF12796ER
570417.WPa_0787PF12796ER
570417.WPa_0252(PF01343)(mitochondrial)
570417.WPa_0512+ER
570417.WPa_0326(PF01343)(mitochondrial)
570417.WPa_0637+ER
570417.WPa_0293+PF12796
570417.WPa_1006+(mitochondrial)
570417.WPa_0414PF12796 PF00023
570417.WPa_1014+PF12796
570417.WPa_1334+(mitochondrial)
570417.WPa_1337PF12796(ER)
570417.WPa_0339PF12796 PF00023
570417.WPa_0688PF12796 PF00023
570417.WPa_1379PF12796 (PF13637)
570417.WPa_0300PF12796 PF00023
570417.WPa_0652PF13857 (PF13637)
570417.WPa_0658+(mitochondrial)
570417.WPa_1265(PF13481)plastid
570417.WPa_0763PF12796 PF13606
570417.WPa_0768+PF12796
570417.WPa_0680+PF12796
570417.WPa_0812+(mitochondrial)
570417.WPa_0433+(PF13481)
570417.WPa_0383PF12796 PF13857
570417.WPa_0068+(mitochondrial)
570417.WPa_1147+PF00023
570417.WPa_0648PF12796 (PF13637)
570417.WPa_0729PF13857(mitochondrial)
570417.WPa_0731+PF12796
570417.WPa_0103+(mitochondrial)
570417.WPa_1279PF12796 PF00023
570417.WPa_0924+(mitochondrial)
570417.WPa_0070+(plastid)
570417.WPa_0781+(plastid)
570417.WPa_0426+(PF01343)
570417.WPa_1303+(PF01343)
570417.WPa_0452PF12796(ER)
570417.WPa_0733PF12796 PF13857
570417.WPa_0638PF12796 (PF13637)
570417.WPa_0890+
570417.WPa_1349+
570417.WPa_1345+
570417.WPa_0296PF12796
570417.WPa_0205+
570417.WPa_0350+
570417.WPa_0528+
570417.WPa_0521+
570417.WPa_0932+
570417.WPa_0665+
570417.WPa_0987+
570417.WPa_0986+
570417.WPa_0017+
570417.WPa_0790+
570417.WPa_0793+
570417.WPa_1384+
570417.WPa_0449+
570417.WPa_0195PF12796
570417.WPa_0283PF02902
570417.WPa_0831+
570417.WPa_0407PF13857
570417.WPa_0273+
570417.WPa_0173+
570417.WPa_1252+
570417.WPa_0098+
570417.WPa_0875+
570417.WPa_1326+
570417.WPa_1322+
570417.WPa_0507+
570417.WPa_1192+
570417.WPa_0342+
570417.WPa_0346PF12796
570417.WPa_1105PF12796
570417.WPa_0953+
570417.WPa_0689PF12796
570417.WPa_0767PF13606
570417.WPa_0685+
570417.WPa_0481+
570417.WPa_1368+
570417.WPa_0436(PF13481)
570417.WPa_1316(PF13481)
570417.WPa_1312(PF13481)
570417.WPa_0388PF12796
570417.WPa_0266(PF13481)
570417.WPa_0351+
570417.WPa_0506PF12796
570417.WPa_1220PF12796
570417.WPa_1226+
570417.WPa_0315PF12796
570417.WPa_1032+
570417.WPa_1130+
570417.WPa_1318(PF13481)
570417.WPa_0035+
570417.WPa_0868+
570417.WPa_0862PF13857
570417.WPa_1293PF12796
570417.WPa_1291PF02902
570417.WPa_0105+
570417.WPa_0462PF12796
570417.WPa_0606PF12796
570417.WPa_1275PF12796
570417.WPa_0776PF12796
570417.WPa_0774PF12796
570417.WPa_0444+
570417.WPa_1047+
570417.WPa_1305+
570417.WPa_0390PF12796
570417.WPa_0392+
570417.WPa_0257+
570417.WPa_0256PF12796
570417.WPa_1308PF12796
570417.WPa_1309+
570417.WPa_0152+
570417.WPa_0316+
570417.WPa_1129+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================