Effective results for Hyphomicrobium denitrificans ATCC 51888 (eggnog40)

Summary

Number of putative secreted proteins: 119
- Predicted by T4SEpre: 115
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 27 proteins (7 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
582899.Hden_1762+ER
582899.Hden_2016+(mitochondrial); plastid
582899.Hden_3051(PF13506)ER
582899.Hden_2942+ER
582899.Hden_2837+(ER)
582899.Hden_2834+ER
582899.Hden_1375+ER
582899.Hden_2101+ER
582899.Hden_3444+ER
582899.Hden_3447+ER
582899.Hden_0484+ER; (plastid)
582899.Hden_0483(PF13506)ER
582899.Hden_1603+(mitochondrial); (plastid)
582899.Hden_1000+ER
582899.Hden_3090+ER
582899.Hden_2870+(ER)
582899.Hden_0829(PF00856)mitochondrial
582899.Hden_3402+(mitochondrial)
582899.Hden_1068+mitochondrial; (mitochondrial)
582899.Hden_2090+mitochondrial; (mitochondrial)
582899.Hden_1075+ER; (ER)
582899.Hden_1315+ER
582899.Hden_1425+mitochondrial
582899.Hden_2795(PF00856)mitochondrial
582899.Hden_1449+ER
582899.Hden_2119+ER
582899.Hden_3333+ER
582899.Hden_2335+ER
582899.Hden_2889+ER
582899.Hden_0491+ER
582899.Hden_0272+ER
582899.Hden_2179+ER
582899.Hden_0866+ER; (ER)
582899.Hden_0314+(mitochondrial)
582899.Hden_2132+ER
582899.Hden_0488(PF13506)ER
582899.Hden_3343+ER
582899.Hden_3341+ER
582899.Hden_1878+ER
582899.Hden_1402+ER
582899.Hden_2448+ER
582899.Hden_1156+ER
582899.Hden_3146+mitochondrial
582899.Hden_0545+ER
582899.Hden_1418+ER
582899.Hden_1596PF13392 PF00847
582899.Hden_0177PF13392 PF00847
582899.Hden_2685+(ER)
582899.Hden_1322+(plastid)
582899.Hden_0249+(mitochondrial)
582899.Hden_2406+(ER)
582899.Hden_1457+(ER)
582899.Hden_0109PF13392 PF00847
582899.Hden_2564+ER
582899.Hden_1886+(ER)
582899.Hden_1529PF13392 PF00847
582899.Hden_0386(PF06258)
582899.Hden_0141(PF02357)
582899.Hden_3538+
582899.Hden_0154+
582899.Hden_2487+
582899.Hden_1561(PF02357)
582899.Hden_1366+
582899.Hden_1587PF13392
582899.Hden_1997+
582899.Hden_0168PF13392
582899.Hden_1573+
582899.Hden_3513+
582899.Hden_3084+
582899.Hden_0204+
582899.Hden_1005(PF02357)
582899.Hden_1001(PF04519)
582899.Hden_0949+
582899.Hden_1837+
582899.Hden_0235+
582899.Hden_3113+
582899.Hden_1010+
582899.Hden_2476+
582899.Hden_0147PF13392
582899.Hden_1244+
582899.Hden_2046+
582899.Hden_0828(PF00856)
582899.Hden_2688+
582899.Hden_0355+
582899.Hden_3310+
582899.Hden_1809(PF06258)
582899.Hden_3138+
582899.Hden_1494(PF04519)
582899.Hden_2789(PF04519)
582899.Hden_0328+
582899.Hden_0784+
582899.Hden_0255(PF12576)
582899.Hden_2523+
582899.Hden_0806+
582899.Hden_2661+
582899.Hden_0361+
582899.Hden_2081+
582899.Hden_2240+
582899.Hden_3330(PF02689)
582899.Hden_1040+
582899.Hden_2533+
582899.Hden_0776+
582899.Hden_3357+
582899.Hden_2350+
582899.Hden_1219+
582899.Hden_2513+
582899.Hden_2342+
582899.Hden_0850(PF05185)
582899.Hden_1267+
582899.Hden_2365(PF04519)
582899.Hden_3161+
582899.Hden_1228+
582899.Hden_2611+
582899.Hden_0942+
582899.Hden_2149+
582899.Hden_2389(PF04519)
582899.Hden_0437(PF02357)
582899.Hden_0951+
582899.Hden_0559+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================