Effective results for Acidaminococcus fermentans DSM 20731 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 34 proteins (3 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
591001.Acfer_2028				(PF03600)	ER
591001.Acfer_0407				(PF03600)	ER
591001.Acfer_0406				(PF03600)	ER
591001.Acfer_1070				(PF03600)	ER
591001.Acfer_0097				(PF03600)	ER
591001.Acfer_0301				(PF02632)	ER
591001.Acfer_1066				(PF00939)	ER
591001.Acfer_0432				(PF00939)	ER
591001.Acfer_1798				(PF14566)	ER
591001.Acfer_0699				(PF00939)	ER
591001.Acfer_0056				(PF02632)	ER
591001.Acfer_1335				(PF00939)	ER
591001.Acfer_1987				(PF00939)	ER
591001.Acfer_1348				(PF03600)	ER
591001.Acfer_0630				PF07096	ER
591001.Acfer_1429				(PF03600)	ER
591001.Acfer_1594				(PF02632)	ER
591001.Acfer_0235				(PF07837) (PF02971)
591001.Acfer_0025				(PF13023)	(plastid)
591001.Acfer_0644				(PF13023)
591001.Acfer_0278				(PF13240)
591001.Acfer_1773				(PF13332)
591001.Acfer_1776				(PF13332)
591001.Acfer_0433				(PF13240)
591001.Acfer_0183				(PF01991)
591001.Acfer_1407				(PF13240)
591001.Acfer_1408				(PF13240)
591001.Acfer_1757				(PF13023)
591001.Acfer_0374				(PF02632)
591001.Acfer_1767				(PF13332)
591001.Acfer_2086				PF05049
591001.Acfer_2085				PF05049
591001.Acfer_1770				(PF13332)
591001.Acfer_0456				(PF13240)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================