Effective results for Eubacterium saphenum ATCC 49989 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 22 proteins (14 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
592031.GCWU000322_00453(PF00112)ER
592031.GCWU000322_00466PF03382(ER)
592031.GCWU000322_00430PF03382ER
592031.GCWU000322_00685(PF09683)ER
592031.GCWU000322_00867PF10422ER
592031.GCWU000322_00714PF03382mitochondrial
592031.GCWU000322_00285PF03382ER
592031.GCWU000322_00375(PF00112)ER
592031.GCWU000322_00025(PF13507)
592031.GCWU000322_00483PF03382
592031.GCWU000322_00482PF03382
592031.GCWU000322_00464PF03382
592031.GCWU000322_00939PF03382
592031.GCWU000322_00937PF03382
592031.GCWU000322_00580PF03382
592031.GCWU000322_00581PF03382
592031.GCWU000322_00254(PF01121)
592031.GCWU000322_00255(PF01121)
592031.GCWU000322_00502(PF01991)
592031.GCWU000322_00940PF03382
592031.GCWU000322_00011(PF13507)
592031.GCWU000322_00379PF03382

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================