Effective results for Porphyromonas uenonis 60-3 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 63 proteins (36 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
596327.PORUE0001_1097PF12799ER
596327.PORUE0001_1792PF12799ER
596327.PORUE0001_0459(PF13431)ER
596327.PORUE0001_2015PF08323ER
596327.PORUE0001_0341PF12812ER
596327.PORUE0001_0569(PF05649)ER; (ER)
596327.PORUE0001_1803PF12799ER
596327.PORUE0001_1723PF12799ER
596327.PORUE0001_0805(PF05649)ER
596327.PORUE0001_0209(PF13431)ER
596327.PORUE0001_1039(PF05034) (PF07476)
596327.PORUE0001_1957(PF05649)(mitochondrial)
596327.PORUE0001_0485(PF02971) (PF07837)
596327.PORUE0001_1256PF08323
596327.PORUE0001_1257PF08323not used
596327.PORUE0001_0268PF13683not used
596327.PORUE0001_2031PF02978not used
596327.PORUE0001_0321(PF16314)
596327.PORUE0001_2026(PF01175)
596327.PORUE0001_2020(PF00035)not used
596327.PORUE0001_1420(PF13246)
596327.PORUE0001_1337(PF00035)
596327.PORUE0001_2019(PF00035)not used
596327.PORUE0001_2016PF08323not used
596327.PORUE0001_2014PF08323
596327.PORUE0001_2000PF13683not used
596327.PORUE0001_2001PF13683not used
596327.PORUE0001_1772(PF04505)
596327.PORUE0001_0189(PF04505)
596327.PORUE0001_1016(PF01715)
596327.PORUE0001_0568(PF05649)not used
596327.PORUE0001_1718PF12799
596327.PORUE0001_1717PF12799not used
596327.PORUE0001_0140PF13683not used
596327.PORUE0001_1828(PF01175)
596327.PORUE0001_1827PF08323not used
596327.PORUE0001_1959(PF05649)not used
596327.PORUE0001_1958(PF05649)not used
596327.PORUE0001_1997PF13683not used
596327.PORUE0001_1996PF13683not used
596327.PORUE0001_1041(PF14330)
596327.PORUE0001_0016(PF01715)
596327.PORUE0001_1830PF02978not used
596327.PORUE0001_0712(PF05693)
596327.PORUE0001_0956PF13683
596327.PORUE0001_1449(PF01175)
596327.PORUE0001_1448(PF13246)
596327.PORUE0001_1995PF13683not used
596327.PORUE0001_1999PF13683not used
596327.PORUE0001_1998PF13683not used
596327.PORUE0001_1060PF13683not used
596327.PORUE0001_1269PF08323not used
596327.PORUE0001_1856PF13683not used
596327.PORUE0001_1854PF13683not used
596327.PORUE0001_0280(PF05649)not used
596327.PORUE0001_1808(PF05649)not used
596327.PORUE0001_0206PF08323
596327.PORUE0001_0050PF13683not used
596327.PORUE0001_1503PF02978
596327.PORUE0001_1504PF02978not used
596327.PORUE0001_1895PF12569
596327.PORUE0001_0279PF12799not used
596327.PORUE0001_0278PF12799not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================