Metamenu

Effective results for Helicobacter bilis ATCC 43879 (eggnog40)

Summary

Number of putative secreted proteins: 172
- Predicted by T4SEpre: 162
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 51 proteins (12 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
613026.HRAG_00853+ER
613026.HRAG_02154+ER
613026.HRAG_02023+ER
613026.HRAG_01675+ER
613026.HRAG_00848+ER
613026.HRAG_01156+ER
613026.HRAG_00613+(ER)
613026.HRAG_01472+ER
613026.HRAG_00818(PF00194)ER
613026.HRAG_01811+ER
613026.HRAG_02114+(mitochondrial)
613026.HRAG_02111PF11074ER; (mitochondrial)
613026.HRAG_00718+ER
613026.HRAG_01634+ER
613026.HRAG_00283+ER
613026.HRAG_00002+ER
613026.HRAG_01600+ER
613026.HRAG_00912+ER
613026.HRAG_01971+ER
613026.HRAG_01572+(mitochondrial); mitochondrial
613026.HRAG_01083+ER
613026.HRAG_01797(PF03382)ER
613026.HRAG_01149+ER
613026.HRAG_00412(PF00194)ER
613026.HRAG_01095+ER
613026.HRAG_00578+ER
613026.HRAG_00251+(ER)
613026.HRAG_00558(PF03382)ER
613026.HRAG_01933+ER; (ER)
613026.HRAG_01204(PF05686)(mitochondrial)
613026.HRAG_01597+ER
613026.HRAG_01848PF03269mitochondrial
613026.HRAG_01138+ER
613026.HRAG_01857+(PF03235)
613026.HRAG_01679+(ER)
613026.HRAG_01714+(mitochondrial)
613026.HRAG_00599(PF01633)(mitochondrial)
613026.HRAG_01179+(PF01555)not used
613026.HRAG_01182+(PF01555)
613026.HRAG_01374+(plastid)
613026.HRAG_01085+(mitochondrial)
613026.HRAG_01927PF14113(plastid)
613026.HRAG_02191(PF03382)plastid
613026.HRAG_00187(PF13086)
613026.HRAG_01329+
613026.HRAG_00450+
613026.HRAG_01853(PF03382)not used
613026.HRAG_01587+
613026.HRAG_01072+
613026.HRAG_02026+
613026.HRAG_01678+
613026.HRAG_01669+
613026.HRAG_01668+
613026.HRAG_01919PF14113
613026.HRAG_01662+
613026.HRAG_01264+
613026.HRAG_00841(PF03235)
613026.HRAG_01862(PF03235)
613026.HRAG_00820+
613026.HRAG_01877+
613026.HRAG_01879(PF01555)
613026.HRAG_01528+
613026.HRAG_01529+
613026.HRAG_01902+
613026.HRAG_01277+
613026.HRAG_00871+
613026.HRAG_01702PF14113
613026.HRAG_01704PF14113
613026.HRAG_00639+
613026.HRAG_02004+
613026.HRAG_02002+
613026.HRAG_02172+
613026.HRAG_00645+
613026.HRAG_00518+
613026.HRAG_01643PF09612
613026.HRAG_00828+
613026.HRAG_01243(PF01555)
613026.HRAG_01247+
613026.HRAG_00860+
613026.HRAG_01809(PF01531)
613026.HRAG_00462+
613026.HRAG_02106+
613026.HRAG_01661+
613026.HRAG_01858PF11074
613026.HRAG_01629+
613026.HRAG_01856(PF03235)
613026.HRAG_01454+
613026.HRAG_01452+
613026.HRAG_00095+
613026.HRAG_00070+
613026.HRAG_00384+
613026.HRAG_01259+
613026.HRAG_00499(PF03382)not used
613026.HRAG_01655+
613026.HRAG_01728+
613026.HRAG_01035(PF01555)
613026.HRAG_02116+
613026.HRAG_02112(PF03382)
613026.HRAG_02113(PF03382)
613026.HRAG_02110(PF03235)
613026.HRAG_00241+
613026.HRAG_00391+
613026.HRAG_00800+
613026.HRAG_01283PF00531
613026.HRAG_00936+
613026.HRAG_00937+
613026.HRAG_00899(PF01555)
613026.HRAG_00653+
613026.HRAG_02137+
613026.HRAG_00490+
613026.HRAG_00139+
613026.HRAG_00130+
613026.HRAG_00730+
613026.HRAG_00736+
613026.HRAG_00910+
613026.HRAG_01175+
613026.HRAG_01177PF03269
613026.HRAG_01611+
613026.HRAG_01180(PF01555)
613026.HRAG_01183(PF01555)
613026.HRAG_02085+
613026.HRAG_00858+
613026.HRAG_00195(PF01555)
613026.HRAG_01913PF14113
613026.HRAG_00598(PF01633)
613026.HRAG_01910+
613026.HRAG_00687+
613026.HRAG_00379+
613026.HRAG_01973(PF01764)
613026.HRAG_02071(PF01555)
613026.HRAG_02072+
613026.HRAG_01889+
613026.HRAG_01883+
613026.HRAG_02185(PF01764)
613026.HRAG_01989+
613026.HRAG_00217+
613026.HRAG_00309(PF13086)
613026.HRAG_00308+
613026.HRAG_01366+
613026.HRAG_01962(PF01764)
613026.HRAG_00788+
613026.HRAG_00943+
613026.HRAG_01092(PF01531)
613026.HRAG_02069+
613026.HRAG_02061(PF01633)not used
613026.HRAG_01786(PF01531)
613026.HRAG_02196+
613026.HRAG_01935+
613026.HRAG_02201+
613026.HRAG_00830(PF13086)
613026.HRAG_01310+
613026.HRAG_00793+
613026.HRAG_01951+
613026.HRAG_00955+
613026.HRAG_01940+
613026.HRAG_01948(PF01764)
613026.HRAG_00547+
613026.HRAG_01304+
613026.HRAG_01302+
613026.HRAG_01941PF05577
613026.HRAG_00891+
613026.HRAG_00981+not used
613026.HRAG_01057+
613026.HRAG_02047+
613026.HRAG_00084+
613026.HRAG_00554+
613026.HRAG_01116+
613026.HRAG_01115+
613026.HRAG_01118+
613026.HRAG_02147+
613026.HRAG_00959(PF03382)
613026.HRAG_01658+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================