Effective results for Prevotella sp. oral taxon 472 str. F0295 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 63 proteins (4 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
619693.HMPREF6745_1902(PF16334) (PF16335) (PF17168) (PF08760)ER
619693.HMPREF6745_0935(PF07971)ER
619693.HMPREF6745_0443(PF09471)ER
619693.HMPREF6745_1098(PF07971)ER
619693.HMPREF6745_0608(PF07971)ER
619693.HMPREF6745_0893(PF13905)ER
619693.HMPREF6745_0081(PF13905)ER
619693.HMPREF6745_0880(PF13306)ER
619693.HMPREF6745_1576(PF13905)ER
619693.HMPREF6745_1577(PF13905)mitochondrial; (mitochondrial)
619693.HMPREF6745_1629(PF09295)ER; (ER)
619693.HMPREF6745_2228(PF09471)ER
619693.HMPREF6745_0185(PF13306)ER
619693.HMPREF6745_0778(PF13306)mitochondrial; ER
619693.HMPREF6745_0513(PF13306)ER
619693.HMPREF6745_1007PF13859ER
619693.HMPREF6745_0343(PF13306)ER
619693.HMPREF6745_2874(PF16387)ER
619693.HMPREF6745_2875(PF16387)ER
619693.HMPREF6745_2275(PF01531)(mitochondrial)
619693.HMPREF6745_2680(PF16332)ER
619693.HMPREF6745_1791(PF03051)(mitochondrial)
619693.HMPREF6745_1665(PF13306)ER
619693.HMPREF6745_1668(PF13306)ER
619693.HMPREF6745_0327(PF07971)(mitochondrial)
619693.HMPREF6745_0325(PF07971)ER
619693.HMPREF6745_1671(PF13306)ER
619693.HMPREF6745_2411PF12812ER
619693.HMPREF6745_2326(PF03051)ER
619693.HMPREF6745_1196(PF03644)(ER)
619693.HMPREF6745_0674(PF16313)mitochondrial; (mitochondrial)
619693.HMPREF6745_0107(PF13905)ER
619693.HMPREF6745_0856(PF00025)ER
619693.HMPREF6745_0923(PF07075)ER
619693.HMPREF6745_0929(PF07075)ER
619693.HMPREF6745_1228(PF03644)plastid
619693.HMPREF6745_0602(PF07971)(mitochondrial)
619693.HMPREF6745_1287(PF03051)(mitochondrial)
619693.HMPREF6745_2445(PF05970) (PF02689)
619693.HMPREF6745_2443(PF01715)(mitochondrial)
619693.HMPREF6745_2096(PF02971) (PF07837)
619693.HMPREF6745_1054(PF01531)(mitochondrial)
619693.HMPREF6745_0675(PF16313)(ER)
619693.HMPREF6745_2182(PF01715)(mitochondrial)
619693.HMPREF6745_1885PF16269
619693.HMPREF6745_1886PF16269
619693.HMPREF6745_2994(PF08713)
619693.HMPREF6745_0930(PF16401)
619693.HMPREF6745_3027(PF13151)
619693.HMPREF6745_2149(PF08713)
619693.HMPREF6745_1389(PF16313)
619693.HMPREF6745_2014(PF03630)
619693.HMPREF6745_0881(PF13306)
619693.HMPREF6745_0163(PF16011)
619693.HMPREF6745_1361(PF13905)not used
619693.HMPREF6745_1649(PF16401)
619693.HMPREF6745_0742(PF16314)
619693.HMPREF6745_1662(PF13306)
619693.HMPREF6745_2322(PF05693)
619693.HMPREF6745_1316(PF08713)
619693.HMPREF6745_1260(PF08713)
619693.HMPREF6745_0924(PF07075)not used
619693.HMPREF6745_2162(PF05970)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================