Effective results for Pseudomonas syringae pv. maculicola str. ES4326 (eggnog40)

Summary

Number of putative secreted proteins: 838
- Predicted by EffectiveT3: 240 (high confidence), 348 (low confidence)
- Predicted by EffectiveCCBD: 21 within, 22 before, 49 behind expected region 25..70aa
- Predicted by T4SEpre: 161
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 56 proteins (7 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
629265.PMA4326_07584		(>)	+		ER
629265.PMA4326_20300		(>)			(mitochondrial); (ER)
629265.PMA4326_23891			+		ER
629265.PMA4326_21794			+		mitochondrial; (mitochondrial)
629265.PMA4326_07534			+		mitochondrial; (mitochondrial)
629265.PMA4326_27407			+		ER
629265.PMA4326_01095		+			(ER)
629265.PMA4326_15609			+		ER; (ER)
629265.PMA4326_08910			+		ER
629265.PMA4326_15474		+			mitochondrial
629265.PMA4326_23041			+		ER
629265.PMA4326_12122		+			ER
629265.PMA4326_27947	+				mitochondrial
629265.PMA4326_26547		(>)			(ER)
629265.PMA4326_23001			+		ER
629265.PMA4326_08545				(PF11162)	ER
629265.PMA4326_08061	+				ER; (ER)
629265.PMA4326_18063			+		(ER)
629265.PMA4326_21504				(PF06293)	ER; (ER)
629265.PMA4326_16331	+				(mitochondrial)
629265.PMA4326_27217			+		mitochondrial
629265.PMA4326_04751			+		ER
629265.PMA4326_12012	+				(ER)
629265.PMA4326_18718		(>)			(mitochondrial)
629265.PMA4326_19620			+		(ER)
629265.PMA4326_23181			+		ER
629265.PMA4326_13704			+		ER
629265.PMA4326_14144			+		ER
629265.PMA4326_18343		(>)			ER
629265.PMA4326_17341				PF01150	ER
629265.PMA4326_22494		(<)			ER
629265.PMA4326_27167		(<)			ER
629265.PMA4326_27162			+		ER
629265.PMA4326_04254		(>)			(ER); ER
629265.PMA4326_16079		(>)			(ER); (mitochondrial)
629265.PMA4326_19515				(PF08975)	mitochondrial; (mitochondrial)
629265.PMA4326_22721		(>)			ER
629265.PMA4326_29519			+		ER
629265.PMA4326_21409	+		+	(PF05932)
629265.PMA4326_11692			+		ER
629265.PMA4326_29809		(<)			mitochondrial
629265.PMA4326_11442			+		ER
629265.PMA4326_29539			+		ER
629265.PMA4326_14574			+		ER; (ER)
629265.PMA4326_09300			+		ER; (mitochondrial)
629265.PMA4326_06907		(>)			ER; (ER)
629265.PMA4326_21207		+			ER
629265.PMA4326_12017			+		ER
629265.PMA4326_09400			+		ER; (ER)
629265.PMA4326_18218			+		ER
629265.PMA4326_22049	+				(mitochondrial); plastid
629265.PMA4326_25065			+		mitochondrial
629265.PMA4326_23501			+		ER
629265.PMA4326_14254		(<)			(mitochondrial)
629265.PMA4326_02682			+		mitochondrial; plastid
629265.PMA4326_06942		(>)			ER
629265.PMA4326_07304		+			(ER)
629265.PMA4326_09360			+		ER
629265.PMA4326_27352		(>)			ER
629265.PMA4326_15639				(PF07678)	ER
629265.PMA4326_05980			+		ER
629265.PMA4326_13099			+		ER
629265.PMA4326_23271				(PF06965)	ER; plastid
629265.PMA4326_03469	+				ER
629265.PMA4326_25362		(>)			ER
629265.PMA4326_13249			+		ER
629265.PMA4326_23736		(<)			mitochondrial
629265.PMA4326_27257			+		ER
629265.PMA4326_26122		(>)			(mitochondrial)
629265.PMA4326_01395		+			ER
629265.PMA4326_06852	+				(mitochondrial); (plastid)
629265.PMA4326_21689			+		ER
629265.PMA4326_17641	+	(>)			(plastid)
629265.PMA4326_02332	+				(ER)
629265.PMA4326_17251		(>)			ER
629265.PMA4326_25827			+		ER
629265.PMA4326_29499			+		ER
629265.PMA4326_05176		(<)			ER
629265.PMA4326_12022			+		ER
629265.PMA4326_25777			+		ER
629265.PMA4326_19675			+		mitochondrial; (mitochondrial)
629265.PMA4326_05501		(>)			mitochondrial
629265.PMA4326_25437		+			ER
629265.PMA4326_14024			+		(mitochondrial)
629265.PMA4326_28970	+				mitochondrial
629265.PMA4326_19995			+		ER
629265.PMA4326_00760			+		ER
629265.PMA4326_18458			+		ER
629265.PMA4326_26617			+		ER
629265.PMA4326_14954		(>)			mitochondrial
629265.PMA4326_09105			+		ER
629265.PMA4326_13374			+		ER
629265.PMA4326_24321	+				(mitochondrial); (plastid)
629265.PMA4326_26092				(PF06965)	ER
629265.PMA4326_11182				(PF11162)	ER
629265.PMA4326_15234			+		ER
629265.PMA4326_20245	+				(mitochondrial)
629265.PMA4326_19248			+		(mitochondrial)
629265.PMA4326_26487		(>)			(mitochondrial)
629265.PMA4326_13084				PF13878	(plastid)
629265.PMA4326_11817	+		+
629265.PMA4326_26712			+		(mitochondrial)
629265.PMA4326_12478	+				(plastid)
629265.PMA4326_12473	(+)				(ER); ER
629265.PMA4326_29669	+		+
629265.PMA4326_03849	(+)				ER
629265.PMA4326_25742	(+)		+	PF08030
629265.PMA4326_08525	(+)				(ER)
629265.PMA4326_02367	(+)				ER
629265.PMA4326_22179	+				plastid
629265.PMA4326_09770		(<)			(mitochondrial)
629265.PMA4326_29315	+				(plastid)
629265.PMA4326_02632	+				(plastid)
629265.PMA4326_02792	+				plastid
629265.PMA4326_03014	(+)				(mitochondrial)
629265.PMA4326_16731			+	(PF05932)
629265.PMA4326_00650	(+)				ER
629265.PMA4326_16861	+				(plastid)
629265.PMA4326_05551		(<)	+
629265.PMA4326_23456	(+)				(mitochondrial)
629265.PMA4326_11247	+			(PF13409)
629265.PMA4326_16776			+		(mitochondrial)
629265.PMA4326_16216	(+)				(mitochondrial)
629265.PMA4326_02717	(+)				mitochondrial; (mitochondrial)
629265.PMA4326_21879	+				plastid
629265.PMA4326_01025		+			(ER)
629265.PMA4326_21839	+				(plastid)
629265.PMA4326_21789	(+)				(mitochondrial)
629265.PMA4326_10435	+				(plastid)
629265.PMA4326_27337	(+)				(mitochondrial)
629265.PMA4326_14054	(+)				(mitochondrial)
629265.PMA4326_01240		(<)	+		not used
629265.PMA4326_24336	(+)				ER
629265.PMA4326_12443	(+)				(ER); (plastid)
629265.PMA4326_12117		+			ER
629265.PMA4326_07344	+				plastid
629265.PMA4326_03629		(>)			(mitochondrial)
629265.PMA4326_01495	+		+
629265.PMA4326_17276	(+)				(mitochondrial); (plastid)
629265.PMA4326_21964	+				plastid
629265.PMA4326_02627	+				(plastid)
629265.PMA4326_28102	(+)				(mitochondrial)
629265.PMA4326_03689			+		(mitochondrial)
629265.PMA4326_02647	(+)				(ER)
629265.PMA4326_05371	(+)				(mitochondrial); (plastid)
629265.PMA4326_27757	+			(PF06945)
629265.PMA4326_03009	+				(plastid)
629265.PMA4326_02667	+		+
629265.PMA4326_08620	(+)				(mitochondrial)
629265.PMA4326_15929	(+)				ER
629265.PMA4326_24366	(+)				(mitochondrial)
629265.PMA4326_15944	+		+
629265.PMA4326_02702	(+)				ER; (ER)
629265.PMA4326_03779	+	+
629265.PMA4326_08645	+		+
629265.PMA4326_06917	(+)				(ER)
629265.PMA4326_05805	+				(plastid)
629265.PMA4326_17536		(>)
629265.PMA4326_19283	+
629265.PMA4326_09750	+
629265.PMA4326_24840	(+)	(>)
629265.PMA4326_23301				(PF02146)
629265.PMA4326_26222			+		not used
629265.PMA4326_03519		(<)
629265.PMA4326_15909	+
629265.PMA4326_14134	(+)				(plastid)
629265.PMA4326_25075	+
629265.PMA4326_18168				(PF06945)
629265.PMA4326_24675	+				not used
629265.PMA4326_22851	+
629265.PMA4326_10165	+
629265.PMA4326_22669	(+)				(ER)
629265.PMA4326_20757			+
629265.PMA4326_01892	+
629265.PMA4326_23186	+
629265.PMA4326_14899				(PF02732)
629265.PMA4326_29320		(>)
629265.PMA4326_19810	+
629265.PMA4326_25727	(+)				plastid
629265.PMA4326_13239	+
629265.PMA4326_07941	(+)				(plastid)
629265.PMA4326_22876	+
629265.PMA4326_23046				(PF08856)
629265.PMA4326_22649	+				not used
629265.PMA4326_20737		(>)			not used
629265.PMA4326_14249	+
629265.PMA4326_20345	+
629265.PMA4326_01255	(+)		+
629265.PMA4326_15629	+
629265.PMA4326_24558	+
629265.PMA4326_00120	+
629265.PMA4326_29280	+
629265.PMA4326_03119	+
629265.PMA4326_08420	(+)				(plastid)
629265.PMA4326_02442		(<)
629265.PMA4326_07966	+
629265.PMA4326_02447	+
629265.PMA4326_10210	+
629265.PMA4326_04691	+
629265.PMA4326_20200	+
629265.PMA4326_09615	+
629265.PMA4326_07109	+				not used
629265.PMA4326_20717			+
629265.PMA4326_02057			+
629265.PMA4326_13419	+
629265.PMA4326_14194	+
629265.PMA4326_18243	(+)				(mitochondrial)
629265.PMA4326_19048		(>)
629265.PMA4326_23491				(PF13332)	not used
629265.PMA4326_22019			+
629265.PMA4326_23726				(PF11523)
629265.PMA4326_28865	+
629265.PMA4326_21389			+
629265.PMA4326_29402		(>)
629265.PMA4326_12844	+
629265.PMA4326_09390	+
629265.PMA4326_10230		(>)			not used
629265.PMA4326_06977	+
629265.PMA4326_04109		+
629265.PMA4326_26522	+
629265.PMA4326_25952			+
629265.PMA4326_25957			+
629265.PMA4326_12789	+
629265.PMA4326_14204	+
629265.PMA4326_19745				(PF13409)
629265.PMA4326_13434	(+)				(mitochondrial)
629265.PMA4326_18006	+
629265.PMA4326_13924	(+)				(mitochondrial)
629265.PMA4326_17201	+
629265.PMA4326_12318	+
629265.PMA4326_13204	(+)			PF00338
629265.PMA4326_23246				(PF01129)
629265.PMA4326_23241				(PF05932)
629265.PMA4326_19433		(>)			not used
629265.PMA4326_26507	+
629265.PMA4326_15379	+
629265.PMA4326_06672	+
629265.PMA4326_01542	+
629265.PMA4326_21509				(PF06293)
629265.PMA4326_01812			+
629265.PMA4326_18933	+
629265.PMA4326_25502		(>)			not used
629265.PMA4326_12112	(+)	+
629265.PMA4326_21699			+
629265.PMA4326_24740		(<)
629265.PMA4326_08885	+
629265.PMA4326_02282	+
629265.PMA4326_02287			+
629265.PMA4326_17671			+
629265.PMA4326_21994	+
629265.PMA4326_13634			+
629265.PMA4326_24920	(+)				(plastid)
629265.PMA4326_08500				(PF11162)
629265.PMA4326_18043	+
629265.PMA4326_17241	+				not used
629265.PMA4326_22956			+
629265.PMA4326_10735	+				not used
629265.PMA4326_27207	+				not used
629265.PMA4326_19600			+
629265.PMA4326_23786	+
629265.PMA4326_25522			+
629265.PMA4326_02117				(PF04488)
629265.PMA4326_16291	+
629265.PMA4326_28372	+
629265.PMA4326_13559	+
629265.PMA4326_20145	(+)				(plastid)
629265.PMA4326_17656		(>)
629265.PMA4326_10925	(+)				(mitochondrial)
629265.PMA4326_15729	+
629265.PMA4326_06340		(>)
629265.PMA4326_22154	+
629265.PMA4326_28442				(PF02146)
629265.PMA4326_29764	+				not used
629265.PMA4326_01857			+
629265.PMA4326_10715	+
629265.PMA4326_14624			+
629265.PMA4326_00090	+
629265.PMA4326_19590		(>)
629265.PMA4326_22459	+
629265.PMA4326_15899			+
629265.PMA4326_08330				(PF08417)	not used
629265.PMA4326_13024		(<)
629265.PMA4326_01445		(<)
629265.PMA4326_19363	+
629265.PMA4326_21484	+
629265.PMA4326_07219	+
629265.PMA4326_19438	+				not used
629265.PMA4326_02652	+
629265.PMA4326_02302	+
629265.PMA4326_02657	+
629265.PMA4326_19825	+
629265.PMA4326_16866		(>)
629265.PMA4326_01877	(+)				(plastid)
629265.PMA4326_19640	+
629265.PMA4326_07027				(PF13409)
629265.PMA4326_29170			+
629265.PMA4326_06772	+
629265.PMA4326_20185	+
629265.PMA4326_23986				(PF08856)
629265.PMA4326_17346				PF01150
629265.PMA4326_24453		(>)
629265.PMA4326_21979	(+)				(mitochondrial)
629265.PMA4326_24980	+
629265.PMA4326_00225	(+)				(plastid)
629265.PMA4326_26587	+
629265.PMA4326_25055	+
629265.PMA4326_27987	+
629265.PMA4326_22119			+
629265.PMA4326_00915	+
629265.PMA4326_09560	+
629265.PMA4326_02672				(PF05932)
629265.PMA4326_02677	+
629265.PMA4326_27517			+		not used
629265.PMA4326_10750	(+)				plastid
629265.PMA4326_11302				(PF06945)
629265.PMA4326_18328			+
629265.PMA4326_24431	+
629265.PMA4326_02537	+
629265.PMA4326_20395	+
629265.PMA4326_06562	+				not used
629265.PMA4326_09760	+
629265.PMA4326_29709	+
629265.PMA4326_12077	(+)				(plastid)
629265.PMA4326_12072	+
629265.PMA4326_07804	(+)				(mitochondrial)
629265.PMA4326_01612	+
629265.PMA4326_27067	+
629265.PMA4326_13624	+
629265.PMA4326_08820	+
629265.PMA4326_21939	+
629265.PMA4326_21934	+
629265.PMA4326_27492		(>)
629265.PMA4326_25397	+
629265.PMA4326_04811			+
629265.PMA4326_19845	+
629265.PMA4326_10535			+
629265.PMA4326_20275	+
629265.PMA4326_13954	+
629265.PMA4326_08390	+				not used
629265.PMA4326_14549	+
629265.PMA4326_16099			+
629265.PMA4326_24161			+
629265.PMA4326_16636	+				not used
629265.PMA4326_02572	+
629265.PMA4326_06520	+
629265.PMA4326_21247			+
629265.PMA4326_14499	+
629265.PMA4326_12523				(PF06945)
629265.PMA4326_02382	+
629265.PMA4326_28037			+
629265.PMA4326_08186	+
629265.PMA4326_18448			+
629265.PMA4326_14964			+
629265.PMA4326_28955	+				not used
629265.PMA4326_04034	+
629265.PMA4326_19700	+
629265.PMA4326_05815			+
629265.PMA4326_03749	+
629265.PMA4326_18133	+				not used
629265.PMA4326_13819	+
629265.PMA4326_16991	+
629265.PMA4326_12779	(+)		+
629265.PMA4326_26257	(+)				plastid
629265.PMA4326_26252	+
629265.PMA4326_23151		(>)			not used
629265.PMA4326_26437	+
629265.PMA4326_24615	+
629265.PMA4326_13164	+
629265.PMA4326_06020				(PF13332)	not used
629265.PMA4326_26057	(+)				(mitochondrial)
629265.PMA4326_18408	+
629265.PMA4326_17711	+
629265.PMA4326_19575	+
629265.PMA4326_14439			+
629265.PMA4326_16381	+
629265.PMA4326_23941	+
629265.PMA4326_12719		+			not used
629265.PMA4326_20762	+
629265.PMA4326_08206			+
629265.PMA4326_01060	+
629265.PMA4326_19038	+
629265.PMA4326_20997		(<)
629265.PMA4326_26232			+
629265.PMA4326_15674	+
629265.PMA4326_15269	+
629265.PMA4326_16461	(+)		+
629265.PMA4326_06140	+				not used
629265.PMA4326_17736	+
629265.PMA4326_22861	+
629265.PMA4326_25907		+
629265.PMA4326_07544	+
629265.PMA4326_13284	+
629265.PMA4326_28242		+
629265.PMA4326_10415	+
629265.PMA4326_20350		(<)
629265.PMA4326_21594	+
629265.PMA4326_26742	+
629265.PMA4326_13694	+
629265.PMA4326_15829				(PF11162)
629265.PMA4326_12834	+
629265.PMA4326_02472			+		not used
629265.PMA4326_05086				(PF06293)
629265.PMA4326_08011	+				not used
629265.PMA4326_16936	+
629265.PMA4326_10190		(<)
629265.PMA4326_27602				(PF13332)
629265.PMA4326_04681			+
629265.PMA4326_25922			+
629265.PMA4326_09195	+
629265.PMA4326_04911	+
629265.PMA4326_24091	+
629265.PMA4326_21629	(+)			(PF04488)
629265.PMA4326_05985		(>)			not used
629265.PMA4326_09380				(PF06945)
629265.PMA4326_24391		+
629265.PMA4326_13679	(+)		+
629265.PMA4326_14459			+
629265.PMA4326_09600	+
629265.PMA4326_07119		+
629265.PMA4326_15329	(+)				(ER)
629265.PMA4326_13799			+
629265.PMA4326_13424		(<)
629265.PMA4326_13934	+
629265.PMA4326_17231	+
629265.PMA4326_11652			+
629265.PMA4326_25085	(+)				(plastid)
629265.PMA4326_20110				(PF02146)
629265.PMA4326_06395		(>)
629265.PMA4326_24910	+
629265.PMA4326_12794			+
629265.PMA4326_28627				PF00338
629265.PMA4326_19218			+		not used
629265.PMA4326_28007	+
629265.PMA4326_18928	+
629265.PMA4326_26187	+
629265.PMA4326_14829	(+)				(plastid)
629265.PMA4326_06415	+
629265.PMA4326_23751			+
629265.PMA4326_24575			+
629265.PMA4326_20897	+
629265.PMA4326_14009	+
629265.PMA4326_17666	+
629265.PMA4326_24246				(PF02146)	not used
629265.PMA4326_03424	+
629265.PMA4326_15369	+
629265.PMA4326_08515	+
629265.PMA4326_11532		(>)
629265.PMA4326_28162	+
629265.PMA4326_21519				(PF06293)
629265.PMA4326_21514				(PF06293)
629265.PMA4326_22966	+
629265.PMA4326_00600	+
629265.PMA4326_05925				(PF06965)
629265.PMA4326_09050	+
629265.PMA4326_12348		(<)
629265.PMA4326_13569	+
629265.PMA4326_08096	(+)	(>)
629265.PMA4326_10260	+
629265.PMA4326_28157		(>)
629265.PMA4326_02622	+
629265.PMA4326_14754		(<)
629265.PMA4326_00885	+
629265.PMA4326_19615	+				not used
629265.PMA4326_19610		+
629265.PMA4326_16286	+
629265.PMA4326_16064			+
629265.PMA4326_19373	(+)	(>)
629265.PMA4326_21499	(+)				(ER)
629265.PMA4326_11712		(>)
629265.PMA4326_12002	(+)	(>)
629265.PMA4326_18768				(PF02146)
629265.PMA4326_01842	+
629265.PMA4326_27527	+				not used
629265.PMA4326_26692			+
629265.PMA4326_15064		(>)
629265.PMA4326_07444	+
629265.PMA4326_25110	(+)				(mitochondrial)
629265.PMA4326_01787	+
629265.PMA4326_00925	+
629265.PMA4326_13194	(+)				(mitochondrial)
629265.PMA4326_16746				(PF10013)	not used
629265.PMA4326_02662				(PF05932)
629265.PMA4326_10740	+
629265.PMA4326_19650	+				not used
629265.PMA4326_16034		(>)
629265.PMA4326_09945	+
629265.PMA4326_22489	+
629265.PMA4326_13994			+
629265.PMA4326_17371	+
629265.PMA4326_21909			+
629265.PMA4326_02502	+
629265.PMA4326_04269			+
629265.PMA4326_14509			+
629265.PMA4326_14504	(+)				(ER)
629265.PMA4326_29739	(+)				plastid
629265.PMA4326_01315	(+)				(plastid)
629265.PMA4326_21354		+
629265.PMA4326_26382	+
629265.PMA4326_28652			+
629265.PMA4326_06355				(PF13409)
629265.PMA4326_19313		(>)			not used
629265.PMA4326_21929			+
629265.PMA4326_11005	+
629265.PMA4326_23651	+
629265.PMA4326_07017	+
629265.PMA4326_13334	+
629265.PMA4326_16781	+
629265.PMA4326_20260		(>)
629265.PMA4326_26637	+
629265.PMA4326_20842	(+)				(ER)
629265.PMA4326_00555	(+)				(plastid)
629265.PMA4326_26147	+
629265.PMA4326_26362			+
629265.PMA4326_03924	+
629265.PMA4326_28905			+
629265.PMA4326_28457	+
629265.PMA4326_21414				(PF14566)
629265.PMA4326_15794		(>)
629265.PMA4326_24820	+
629265.PMA4326_27732	+
629265.PMA4326_26282	+
629265.PMA4326_25412			+
629265.PMA4326_09820			+
629265.PMA4326_06095				PF07217
629265.PMA4326_21884	+
629265.PMA4326_24346		+
629265.PMA4326_26612			+
629265.PMA4326_15169				(PF05277)
629265.PMA4326_04636	(+)				(plastid)
629265.PMA4326_14489	+
629265.PMA4326_06702	+
629265.PMA4326_11217			+
629265.PMA4326_28925			+
629265.PMA4326_18668	+
629265.PMA4326_05486			+
629265.PMA4326_03774	+
629265.PMA4326_08460			+		not used
629265.PMA4326_14364	(+)				(plastid)
629265.PMA4326_02919		+
629265.PMA4326_17406	+
629265.PMA4326_14654		(<)
629265.PMA4326_27857			+
629265.PMA4326_16986	+
629265.PMA4326_26097				(PF06965)	not used
629265.PMA4326_22771	+
629265.PMA4326_13584	+
629265.PMA4326_12189	+
629265.PMA4326_18603	+
629265.PMA4326_26792				(PF00646)	not used
629265.PMA4326_03754	+
629265.PMA4326_22239	+
629265.PMA4326_21849		(>)
629265.PMA4326_01912	+
629265.PMA4326_27657		(<)			not used
629265.PMA4326_11437	+
629265.PMA4326_14354	+
629265.PMA4326_12704	(+)				(plastid)
629265.PMA4326_02032			+
629265.PMA4326_28217	(+)
629265.PMA4326_14139	(+)
629265.PMA4326_17531	(+)
629265.PMA4326_27797	(+)
629265.PMA4326_01075	(+)
629265.PMA4326_19023	(+)
629265.PMA4326_12573	(+)
629265.PMA4326_05820	(+)				not used
629265.PMA4326_22214	(+)
629265.PMA4326_25070	(+)
629265.PMA4326_08930	(+)
629265.PMA4326_04881	(+)
629265.PMA4326_04886	(+)
629265.PMA4326_21829	(+)
629265.PMA4326_04164	(+)
629265.PMA4326_09435	(+)
629265.PMA4326_28985	(+)				not used
629265.PMA4326_16136	(+)
629265.PMA4326_20360	(+)
629265.PMA4326_10390	(+)
629265.PMA4326_07334	(+)				not used
629265.PMA4326_00325	(+)
629265.PMA4326_12558	(+)
629265.PMA4326_15859	(+)
629265.PMA4326_21809	(+)
629265.PMA4326_14074	(+)
629265.PMA4326_22644	(+)
629265.PMA4326_10400	(+)
629265.PMA4326_02697	(+)
629265.PMA4326_11627	(+)
629265.PMA4326_13669	(+)
629265.PMA4326_15839	(+)
629265.PMA4326_10215	(+)
629265.PMA4326_14059	(+)
629265.PMA4326_10065	(+)
629265.PMA4326_14514	(+)
629265.PMA4326_18023	(+)
629265.PMA4326_19268	(+)
629265.PMA4326_10025	(+)
629265.PMA4326_10020	(+)
629265.PMA4326_11317	(+)
629265.PMA4326_11647	(+)
629265.PMA4326_03134	(+)
629265.PMA4326_25897	(+)
629265.PMA4326_28860	(+)
629265.PMA4326_25542	(+)
629265.PMA4326_08046	(+)
629265.PMA4326_23266	(+)
629265.PMA4326_07129	(+)
629265.PMA4326_13254	(+)
629265.PMA4326_01385	(+)
629265.PMA4326_03159	(+)
629265.PMA4326_16526	(+)
629265.PMA4326_02157	(+)
629265.PMA4326_15374	(+)
629265.PMA4326_19358	(+)
629265.PMA4326_14229	(+)
629265.PMA4326_29447	(+)
629265.PMA4326_13749	(+)
629265.PMA4326_20497	(+)
629265.PMA4326_24498	(+)
629265.PMA4326_19168	(+)
629265.PMA4326_07189	(+)
629265.PMA4326_11097	(+)
629265.PMA4326_20792	(+)
629265.PMA4326_03039	(+)
629265.PMA4326_11897	(+)
629265.PMA4326_09520	(+)
629265.PMA4326_08780	(+)
629265.PMA4326_09065	(+)				not used
629265.PMA4326_29375	(+)
629265.PMA4326_16271	(+)
629265.PMA4326_10945	(+)
629265.PMA4326_04239	(+)
629265.PMA4326_29749	(+)
629265.PMA4326_12032	(+)
629265.PMA4326_26117	(+)
629265.PMA4326_25877	(+)
629265.PMA4326_16256	(+)
629265.PMA4326_24236	(+)
629265.PMA4326_11582	(+)
629265.PMA4326_07799	(+)				not used
629265.PMA4326_16751	(+)
629265.PMA4326_10570	(+)				not used
629265.PMA4326_08166	(+)
629265.PMA4326_14669	(+)
629265.PMA4326_05536	(+)
629265.PMA4326_26177	(+)
629265.PMA4326_14984	(+)
629265.PMA4326_03244	(+)
629265.PMA4326_20435	(+)
629265.PMA4326_08800	(+)
629265.PMA4326_05321	(+)
629265.PMA4326_18818	(+)
629265.PMA4326_22539	(+)
629265.PMA4326_25622	(+)
629265.PMA4326_20872	(+)
629265.PMA4326_12684	(+)				not used
629265.PMA4326_29397	(+)
629265.PMA4326_17446	(+)
629265.PMA4326_19303	(+)
629265.PMA4326_14149	+
629265.PMA4326_03709	(+)
629265.PMA4326_09835	(+)				not used
629265.PMA4326_14339	(+)
629265.PMA4326_04816	(+)
629265.PMA4326_05061	(+)
629265.PMA4326_11202	(+)
629265.PMA4326_09130	(+)
629265.PMA4326_11075	(+)
629265.PMA4326_09850	(+)
629265.PMA4326_10705	(+)
629265.PMA4326_06065	(+)
629265.PMA4326_26667	(+)
629265.PMA4326_26082	(+)
629265.PMA4326_20457	(+)
629265.PMA4326_09110	(+)
629265.PMA4326_06200	(+)
629265.PMA4326_08865	(+)				not used
629265.PMA4326_24106	(+)
629265.PMA4326_00735	(+)
629265.PMA4326_17906	(+)
629265.PMA4326_26412	(+)
629265.PMA4326_23176	(+)
629265.PMA4326_03744	(+)
629265.PMA4326_10865	(+)
629265.PMA4326_05246	(+)
629265.PMA4326_04194	(+)
629265.PMA4326_27662	(+)				not used
629265.PMA4326_20817	(+)
629265.PMA4326_22204	(+)
629265.PMA4326_18713	(+)
629265.PMA4326_06972	(+)
629265.PMA4326_04469	(+)
629265.PMA4326_15389	(+)
629265.PMA4326_27412	(+)
629265.PMA4326_01065	(+)
629265.PMA4326_03789	(+)
629265.PMA4326_10175	(+)
629265.PMA4326_14419	(+)
629265.PMA4326_22679	(+)
629265.PMA4326_07159	(+)
629265.PMA4326_01260	(+)
629265.PMA4326_19018	(+)
629265.PMA4326_18253	(+)
629265.PMA4326_28890	(+)				not used
629265.PMA4326_15809	(+)
629265.PMA4326_07971	(+)
629265.PMA4326_23016	(+)
629265.PMA4326_11867	(+)
629265.PMA4326_06647	(+)				not used
629265.PMA4326_01510	(+)
629265.PMA4326_25712	(+)
629265.PMA4326_00395	(+)
629265.PMA4326_23481	(+)
629265.PMA4326_00820	(+)
629265.PMA4326_22289	(+)
629265.PMA4326_12303	(+)
629265.PMA4326_12849	(+)
629265.PMA4326_01702	(+)
629265.PMA4326_23251	(+)
629265.PMA4326_27937	(+)
629265.PMA4326_03449	(+)
629265.PMA4326_03624	(+)				not used
629265.PMA4326_00840	(+)
629265.PMA4326_14369	(+)				not used
629265.PMA4326_02412	(+)
629265.PMA4326_02142	(+)
629265.PMA4326_24930	(+)
629265.PMA4326_04514	(+)
629265.PMA4326_25327	(+)
629265.PMA4326_11537	(+)
629265.PMA4326_06602	(+)
629265.PMA4326_13979	(+)				not used
629265.PMA4326_10055	(+)
629265.PMA4326_14619	(+)
629265.PMA4326_16004	(+)
629265.PMA4326_26302	(+)
629265.PMA4326_02167	(+)
629265.PMA4326_20035	(+)
629265.PMA4326_02832	(+)
629265.PMA4326_24483	(+)
629265.PMA4326_15739	(+)
629265.PMA4326_11552	(+)
629265.PMA4326_08795	(+)
629265.PMA4326_21339	(+)
629265.PMA4326_09075	(+)
629265.PMA4326_22444	(+)
629265.PMA4326_06235	(+)
629265.PMA4326_01105	(+)
629265.PMA4326_00270	(+)
629265.PMA4326_23091	(+)
629265.PMA4326_04559	(+)
629265.PMA4326_28177	(+)
629265.PMA4326_09790	(+)
629265.PMA4326_07851	(+)
629265.PMA4326_10890	(+)
629265.PMA4326_10545	(+)
629265.PMA4326_20205	(+)
629265.PMA4326_23406	(+)
629265.PMA4326_02122	(+)
629265.PMA4326_22469	(+)
629265.PMA4326_28342	(+)
629265.PMA4326_18513	(+)
629265.PMA4326_19138	(+)
629265.PMA4326_11777	(+)
629265.PMA4326_13739	(+)
629265.PMA4326_17626	(+)
629265.PMA4326_13199	(+)
629265.PMA4326_24056	(+)
629265.PMA4326_10600	(+)
629265.PMA4326_15109	(+)
629265.PMA4326_16024	(+)				not used
629265.PMA4326_14089	(+)
629265.PMA4326_19333	(+)				not used
629265.PMA4326_25882	(+)
629265.PMA4326_22109	(+)
629265.PMA4326_06682	(+)
629265.PMA4326_14179	(+)
629265.PMA4326_10505	(+)
629265.PMA4326_16836	(+)
629265.PMA4326_20862	(+)
629265.PMA4326_14994	(+)
629265.PMA4326_11922	(+)
629265.PMA4326_02432	(+)
629265.PMA4326_08815	(+)
629265.PMA4326_10335	(+)
629265.PMA4326_23381	(+)
629265.PMA4326_03599	(+)
629265.PMA4326_03594	(+)
629265.PMA4326_26442	(+)
629265.PMA4326_09800	(+)
629265.PMA4326_20672	(+)
629265.PMA4326_20847	(+)
629265.PMA4326_27812	(+)
629265.PMA4326_15149	(+)
629265.PMA4326_15009	(+)
629265.PMA4326_10310	(+)
629265.PMA4326_04009	(+)
629265.PMA4326_22504	(+)
629265.PMA4326_12239	(+)
629265.PMA4326_07724	(+)
629265.PMA4326_08445	(+)
629265.PMA4326_26872	(+)
629265.PMA4326_29694	(+)
629265.PMA4326_25190	(+)
629265.PMA4326_16626	(+)
629265.PMA4326_18593	(+)
629265.PMA4326_02707	(+)
629265.PMA4326_08271	(+)
629265.PMA4326_03559	(+)
629265.PMA4326_05865	(+)
629265.PMA4326_12538	(+)
629265.PMA4326_13119	(+)
629265.PMA4326_16431	(+)
629265.PMA4326_18128	(+)
629265.PMA4326_21869	(+)
629265.PMA4326_12568	(+)
629265.PMA4326_16981	(+)
629265.PMA4326_11457	(+)
629265.PMA4326_09695	(+)
629265.PMA4326_07434	(+)
629265.PMA4326_09485	(+)
629265.PMA4326_12989	(+)
629265.PMA4326_28497	(+)
629265.PMA4326_10460	(+)
629265.PMA4326_24790	(+)				not used
629265.PMA4326_26427	(+)
629265.PMA4326_23141	(+)				not used
629265.PMA4326_04404	(+)
629265.PMA4326_05800	(+)				not used
629265.PMA4326_10850	(+)
629265.PMA4326_18143	(+)
629265.PMA4326_26652	(+)
629265.PMA4326_05586	(+)
629265.PMA4326_04264	(+)
629265.PMA4326_03329	(+)
629265.PMA4326_21022	(+)
629265.PMA4326_18628	(+)
629265.PMA4326_16661	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.5 (15/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.6 (6/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================