Effective results for Cardiobacterium hominis ATCC 15826 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
638300.HMPREF0198_1695(PF13332)ER
638300.HMPREF0198_1969(PF05684)ER
638300.HMPREF0198_1700(PF13332)ER
638300.HMPREF0198_0235(PF04970)(mitochondrial)
638300.HMPREF0198_1468(PF14413) (PF04446)
638300.HMPREF0198_1472(PF09511)(mitochondrial)
638300.HMPREF0198_2551(PF13332)
638300.HMPREF0198_0605(PF03162)
638300.HMPREF0198_0236(PF04970)
638300.HMPREF0198_2573(PF12138)not used
638300.HMPREF0198_1501(PF13332)not used
638300.HMPREF0198_2511(PF05167)
638300.HMPREF0198_1894(PF00755)
638300.HMPREF0198_2305(PF12138)not used
638300.HMPREF0198_0359(PF05929)
638300.HMPREF0198_1762(PF05684)
638300.HMPREF0198_1480(PF05167)
638300.HMPREF0198_2127(PF05929)
638300.HMPREF0198_1494(PF13332)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================