Effective results for Selenomonas flueggei ATCC 43531 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 22 proteins (3 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
638302.HMPREF0908_1199				(PF05684)	ER
638302.HMPREF0908_1138				(PF14566)	ER
638302.HMPREF0908_0121				(PF01871)	(ER)
638302.HMPREF0908_1751				(PF05684)	ER
638302.HMPREF0908_1913				PF00349 PF03727
638302.HMPREF0908_0064				(PF01808)	(mitochondrial)
638302.HMPREF0908_1479				PF00349 PF03727
638302.HMPREF0908_1182				(PF13844)
638302.HMPREF0908_0958				(PF13541)
638302.HMPREF0908_1569				(PF13844)
638302.HMPREF0908_1571				(PF13844)
638302.HMPREF0908_1570				(PF13844)
638302.HMPREF0908_0529				(PF13844)
638302.HMPREF0908_1154				(PF13541)	not used
638302.HMPREF0908_0474				(PF01871)
638302.HMPREF0908_0667				(PF12646)
638302.HMPREF0908_0896				(PF13541)
638302.HMPREF0908_0892				(PF13844)
638302.HMPREF0908_0421				(PF01808)
638302.HMPREF0908_0422				(PF01808)	not used
638302.HMPREF0908_0920				(PF13541)
638302.HMPREF0908_0324				PF11443

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================