Effective results for Thermocrinis albus DSM 14484 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 22 proteins (3 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
638303.Thal_1587(PF07998)ER
638303.Thal_0317(PF04930)(ER)
638303.Thal_0545PF02005(ER)
638303.Thal_1140(PF00025)(mitochondrial)
638303.Thal_0164(PF03266)
638303.Thal_1033(PF00025)
638303.Thal_0201(PF16114)
638303.Thal_1342(PF01597)
638303.Thal_1339(PF01597)
638303.Thal_1324(PF00543)
638303.Thal_1323(PF00543)
638303.Thal_0252(PF00543)
638303.Thal_1311(PF00543)
638303.Thal_0906PF00961
638303.Thal_0642PF03465
638303.Thal_0676(PF01597)
638303.Thal_0942(PF01597)
638303.Thal_0055(PF07720)
638303.Thal_0965(PF01597)
638303.Thal_0410(PF00543)
638303.Thal_0411(PF00543)
638303.Thal_0656(PF00543)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================