Effective results for Ochrobactrum intermedium LMG 3301 (eggnog40)

Summary

Number of putative secreted proteins: 91
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 25 proteins (1 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
641118.OINT_2001866(PF07364) (PF07171)mitochondrial; (mitochondrial)
641118.OINT_2001375(PF07364) (PF07171)mitochondrial
641118.OINT_1001652(PF00050) (PF07648)ER
641118.OINT_2001628(PF02275)ER
641118.OINT_2001715+mitochondrial
641118.OINT_1001422+mitochondrial
641118.OINT_1001738+(mitochondrial)
641118.OINT_2001089+mitochondrial
641118.OINT_2000142+mitochondrial; (mitochondrial)
641118.OINT_1000363(PF05990)ER
641118.OINT_2000105+mitochondrial; (mitochondrial)
641118.OINT_2000319+mitochondrial; (mitochondrial)
641118.OINT_2000008+(mitochondrial)
641118.OINT_1001175+(ER); ER
641118.OINT_1001614+ER
641118.OINT_1000982+ER
641118.OINT_1001743+(mitochondrial)
641118.OINT_2001810+(mitochondrial)
641118.OINT_2001573+(mitochondrial); (ER)
641118.OINT_2001802(PF00344)(mitochondrial); mitochondrial
641118.OINT_2001800+ER
641118.OINT_1001002+(mitochondrial); mitochondrial
641118.OINT_2001348+(PF02275)(mitochondrial)
641118.OINT_1000645+mitochondrial
641118.OINT_1001017+ER
641118.OINT_2001389+ER
641118.OINT_2001437+mitochondrial
641118.OINT_2001438+ER
641118.OINT_1001535+ER
641118.OINT_1000901(PF05990)ER
641118.OINT_2001271+(plastid)
641118.OINT_2001502(PF07364) (PF07171)
641118.OINT_1002171+(mitochondrial)
641118.OINT_2001070+(plastid)
641118.OINT_2001315+plastid
641118.OINT_1000757(PF04800)mitochondrial
641118.OINT_2001490(PF07364) (PF07171)
641118.OINT_2001000(PF07364) (PF07171)
641118.OINT_2000095+(ER)
641118.OINT_2001285+(mitochondrial)
641118.OINT_2000646+(plastid)
641118.OINT_2000268(PF01812)(mitochondrial)
641118.OINT_1000473+(mitochondrial)
641118.OINT_1001197+(PF01442)
641118.OINT_2001362+(mitochondrial)
641118.OINT_1001183+
641118.OINT_1000862(PF05990)
641118.OINT_2001475+
641118.OINT_1001438+
641118.OINT_1000634+
641118.OINT_1000708+
641118.OINT_1000442+
641118.OINT_1001400+
641118.OINT_1000715+
641118.OINT_1001395+
641118.OINT_1001349+
641118.OINT_2000858+
641118.OINT_2001183+
641118.OINT_2001857(PF04800)
641118.OINT_1000426(PF07653)
641118.OINT_1001147+
641118.OINT_1001387+
641118.OINT_2000080+
641118.OINT_1000349+
641118.OINT_2001629(PF02275)
641118.OINT_1000407+
641118.OINT_1001163+
641118.OINT_1001166+
641118.OINT_1000355(PF00777)
641118.OINT_1001340(PF00344)
641118.OINT_2001552(PF01498)
641118.OINT_2000794PF07823
641118.OINT_1001337+
641118.OINT_1000515+
641118.OINT_1001039+
641118.OINT_2001775+
641118.OINT_1001649+
641118.OINT_2001808+
641118.OINT_1001862(PF07930)
641118.OINT_2001162+
641118.OINT_1001497+
641118.OINT_1000838+
641118.OINT_1002473+
641118.OINT_1002097(PF01812)
641118.OINT_1001383+
641118.OINT_1001846+
641118.OINT_2001615+
641118.OINT_1002326+
641118.OINT_1000526+
641118.OINT_2000264(PF01812)
641118.OINT_2001258+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.9 (9/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================