Effective results for Desulfovibrio aespoeensis Aspo-2 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 109 proteins (33 high, 76 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
643562.Daes_0523				PF12762	ER; (ER)
643562.Daes_1866				(PF13174)	ER
643562.Daes_1466				PF12762	ER; (ER)
643562.Daes_1463				PF12762	ER; (ER)
643562.Daes_1805				PF12762	ER; (ER)
643562.Daes_3040				(PF13524)	(ER); ER
643562.Daes_2153				(PF13174)	ER
643562.Daes_1577				(PF01880)	(ER)
643562.Daes_3206				PF12762	ER; (ER)
643562.Daes_1554				(PF13174)	ER
643562.Daes_3059				(PF03306)	ER
643562.Daes_3174				(PF13174)	ER
643562.Daes_1539				(PF13524)	ER
643562.Daes_1328				PF12762	ER; (ER)
643562.Daes_0129				PF12762	ER; (ER)
643562.Daes_0111				PF12762	ER; (ER)
643562.Daes_1606				(PF07678)	mitochondrial
643562.Daes_3296				PF12762	ER; (ER)
643562.Daes_1150				(PF16715)	(mitochondrial)
643562.Daes_1283				(PF13524)	(mitochondrial)
643562.Daes_1668				PF12762	ER; (ER)
643562.Daes_1712				(PF13174)	ER
643562.Daes_1124				(PF06500)	ER
643562.Daes_1125				(PF06500)	ER
643562.Daes_1268				(PF06968)	(mitochondrial)
643562.Daes_1464				PF13683	(mitochondrial)
643562.Daes_2449				PF13683	(mitochondrial)
643562.Daes_2058				PF13683	(mitochondrial)
643562.Daes_3219				PF13683	(mitochondrial)
643562.Daes_0695				PF13683	(mitochondrial)
643562.Daes_0782				(PF13187)	(ER)
643562.Daes_2557				PF13683	(mitochondrial)
643562.Daes_2541				(PF01527)	(mitochondrial)
643562.Daes_1940				PF13683	(mitochondrial)
643562.Daes_1304				(PF06071)	(mitochondrial)
643562.Daes_1881				PF13683	(mitochondrial)
643562.Daes_0478				PF13683	(mitochondrial)
643562.Daes_2530				PF13683	(mitochondrial)
643562.Daes_2537				(PF01527)	(mitochondrial)
643562.Daes_0627				PF13683	(mitochondrial)
643562.Daes_0778				(PF01527)
643562.Daes_1465				(PF01527)
643562.Daes_2961				(PF06071)
643562.Daes_0733				(PF13174)
643562.Daes_0352				(PF03306)
643562.Daes_2611				(PF13524)
643562.Daes_0349				(PF13187)
643562.Daes_0299				(PF06968)
643562.Daes_0696				(PF01527)
643562.Daes_1755				(PF02943)
643562.Daes_2451				PF12762
643562.Daes_2450				(PF01527)
643562.Daes_2057				(PF01527)
643562.Daes_1349				(PF10294)
643562.Daes_2839				(PF13524)
643562.Daes_0743				(PF09825)
643562.Daes_0363				(PF13524)
643562.Daes_0416				(PF01527)
643562.Daes_2336				(PF10143)
643562.Daes_2026				PF13513
643562.Daes_2930				PF12762
643562.Daes_1591				(PF02732)
643562.Daes_0770				(PF06968)
643562.Daes_3034				(PF13187)
643562.Daes_3030				(PF13534)
643562.Daes_3031				(PF13187)
643562.Daes_2030				(PF13187)
643562.Daes_0163				PF12762
643562.Daes_0302				(PF13187)
643562.Daes_0783				(PF13534)
643562.Daes_0781				(PF13534)
643562.Daes_3333				PF13683
643562.Daes_3332				(PF01527)
643562.Daes_3331				PF12762
643562.Daes_2558				(PF01527)
643562.Daes_2553				(PF00162)
643562.Daes_0338				(PF00622)
643562.Daes_1558				(PF00162)
643562.Daes_2789				(PF01527)
643562.Daes_2788				PF13683
643562.Daes_1941				(PF01527)
643562.Daes_1946				(PF13187)
643562.Daes_2161				(PF10294)
643562.Daes_0628				(PF01527)
643562.Daes_3220				(PF01527)
643562.Daes_3223				PF12762
643562.Daes_1882				(PF01527)
643562.Daes_2379				PF13683
643562.Daes_2195				(PF13524)
643562.Daes_0868				(PF13534)
643562.Daes_0599				(PF13187)
643562.Daes_0596				(PF06968)
643562.Daes_2561				(PF01527)
643562.Daes_2560				PF13683
643562.Daes_2565				PF12762
643562.Daes_1438				(PF10143)
643562.Daes_2981				(PF02516)
643562.Daes_0477				(PF01527)
643562.Daes_2642				(PF13534)
643562.Daes_0807				(PF01880)
643562.Daes_1075				(PF13534)
643562.Daes_0495				(PF01527)
643562.Daes_3288				(PF13187)
643562.Daes_2663				(PF13187)
643562.Daes_2529				(PF01527)
643562.Daes_2090				(PF13187)
643562.Daes_2380				(PF01527)
643562.Daes_2709				(PF05693)
643562.Daes_0014				PF11913

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================