Effective results for Marivirga tractuosa DSM 4126 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 94 proteins (5 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
643867.Ftrac_0686(PF13181) (PF12895)ER
643867.Ftrac_1372(PF13429) (PF13181)ER
643867.Ftrac_0324(PF13181) (PF12895)ER
643867.Ftrac_3729(PF00801)ER
643867.Ftrac_2413(PF13181)ER
643867.Ftrac_3384(PF00801)ER
643867.Ftrac_0075(PF13181)ER
643867.Ftrac_0814(PF07676)ER
643867.Ftrac_0703(PF13181)ER
643867.Ftrac_0498(PF13181)ER
643867.Ftrac_2873(PF03321)mitochondrial
643867.Ftrac_0010(PF13181)ER
643867.Ftrac_2878(PF07676)ER
643867.Ftrac_1741(PF07676)ER
643867.Ftrac_3596(PF04784)ER
643867.Ftrac_1355(PF13181)ER
643867.Ftrac_2455(PF15902)ER
643867.Ftrac_3101(PF13181)ER
643867.Ftrac_3322(PF07676)ER
643867.Ftrac_2858(PF15902)ER
643867.Ftrac_0365(PF15902)ER
643867.Ftrac_0361(PF07676)(ER)
643867.Ftrac_1163(PF15780)ER
643867.Ftrac_1161(PF15902)ER
643867.Ftrac_1168(PF01809)(mitochondrial)
643867.Ftrac_3626(PF13181)ER
643867.Ftrac_0201(PF00801)ER
643867.Ftrac_1978(PF00801)ER
643867.Ftrac_1158(PF13181)ER
643867.Ftrac_3637(PF04784)ER
643867.Ftrac_3301(PF00431)ER
643867.Ftrac_2228(PF00801)ER
643867.Ftrac_3156(PF07676)ER
643867.Ftrac_3153(PF00801)ER
643867.Ftrac_0174(PF07676)ER
643867.Ftrac_1951(PF01030)ER
643867.Ftrac_3149(PF00801)ER
643867.Ftrac_0143(PF13181)ER
643867.Ftrac_0146(PF07676)ER
643867.Ftrac_1237(PF07676)ER
643867.Ftrac_2152PF05176ER
643867.Ftrac_3547(PF13181)ER
643867.Ftrac_0155(PF00801)ER
643867.Ftrac_0151(PF13181)ER
643867.Ftrac_1334(PF13181)ER
643867.Ftrac_3437PF15711ER
643867.Ftrac_1924(PF13181)ER
643867.Ftrac_1106PF10342ER
643867.Ftrac_2170(PF00801)ER
643867.Ftrac_3403(PF13181)ER
643867.Ftrac_0192(PF13181)ER
643867.Ftrac_0624(PF16313)ER
643867.Ftrac_2916(PF07676)ER
643867.Ftrac_2913PF05097ER
643867.Ftrac_3527(PF13181)ER
643867.Ftrac_3258(PF01809)ER
643867.Ftrac_2650(PF16313)ER
643867.Ftrac_2927(PF07676)ER
643867.Ftrac_1901(PF07676)ER
643867.Ftrac_1877(PF00801)ER
643867.Ftrac_1017(PF07676)ER
643867.Ftrac_1010(PF00801)ER
643867.Ftrac_3266(PF12895)ER
643867.Ftrac_3264(PF01809)ER
643867.Ftrac_0260(PF00801)ER
643867.Ftrac_0466(PF16313)ER
643867.Ftrac_0461(PF00965)ER
643867.Ftrac_3328(PF13429) (PF13181)
643867.Ftrac_2583(PF13181)(plastid)
643867.Ftrac_1147(PF10013)(mitochondrial); not used
643867.Ftrac_0396(PF13181)
643867.Ftrac_0806(PF07676)
643867.Ftrac_0230(PF13020)
643867.Ftrac_2509(PF13181)
643867.Ftrac_0232(PF13271)
643867.Ftrac_1198(PF03321)
643867.Ftrac_2675(PF13181)
643867.Ftrac_2983(PF15780)
643867.Ftrac_1659(PF03321)
643867.Ftrac_2196(PF13271)
643867.Ftrac_0024(PF07676)
643867.Ftrac_0376(PF07676)
643867.Ftrac_3305(PF13181)
643867.Ftrac_0347(PF10504)
643867.Ftrac_1962(PF13910)
643867.Ftrac_3576(PF05693)
643867.Ftrac_3786(PF15902)
643867.Ftrac_2495(PF07766)
643867.Ftrac_0142(PF07676)
643867.Ftrac_1305(PF13181)
643867.Ftrac_3681(PF13020)
643867.Ftrac_1442(PF03321)
643867.Ftrac_3505PF07965
643867.Ftrac_0874(PF00801)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================