Effective results for Silicibacter lacuscaerulensis ITI-1157 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 38 proteins (5 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
644107.SL1157_3140(PF08669) (PF16350)ER; (ER)
644107.SL1157_1253(PF08669) (PF16350)ER
644107.SL1157_0301(PF08669) (PF16350)(ER)
644107.SL1157_3076(PF04143)ER
644107.SL1157_3075(PF04143)ER
644107.SL1157_1119(PF13704)mitochondrial
644107.SL1157_0949(PF04143)(ER)
644107.SL1157_0446(PF04143)ER
644107.SL1157_2967(PF08669)(mitochondrial)
644107.SL1157_1241(PF02931)ER
644107.SL1157_0334(PF08669) (PF16350)(ER)
644107.SL1157_1799(PF08669) (PF16350)
644107.SL1157_1637(PF14216)(mitochondrial)
644107.SL1157_1723(PF08669) (PF16350)
644107.SL1157_1584PF00238(mitochondrial); not used
644107.SL1157_1118(PF02485)(ER)
644107.SL1157_1474(PF08669) (PF16350)
644107.SL1157_1470(PF08669) (PF16350)
644107.SL1157_2086(PF13875)
644107.SL1157_0966PF07647
644107.SL1157_1975(PF09458)
644107.SL1157_1122(PF13704)
644107.SL1157_0445(PF04143)
644107.SL1157_1583PF00238not used
644107.SL1157_1939PF07647
644107.SL1157_1938(PF05023)
644107.SL1157_0462(PF04143)
644107.SL1157_2648(PF13704)
644107.SL1157_0898(PF02485)
644107.SL1157_1048(PF09731)
644107.SL1157_2074PF11781
644107.SL1157_3246(PF13704)
644107.SL1157_3243(PF13704)
644107.SL1157_0758(PF13455)
644107.SL1157_2277(PF08669)
644107.SL1157_1349(PF08669)
644107.SL1157_3268(PF08669)
644107.SL1157_2427(PF08669)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================