Effective results for Gordonia neofelifaecis NRRL B-59395 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 26 proteins (5 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
644548.SCNU_05381(PF03959)ER; (ER)
644548.SCNU_04756(PF00743)(mitochondrial)
644548.SCNU_08473(PF17048)(mitochondrial)
644548.SCNU_12993PF05007mitochondrial
644548.SCNU_01830PF13886ER
644548.SCNU_20152(PF08354) PF16073
644548.SCNU_11650(PF14232) (PF14231)
644548.SCNU_05596(PF00743)plastid
644548.SCNU_18127(PF14232) (PF14231)
644548.SCNU_08951PF08213not used
644548.SCNU_03562(PF00743)
644548.SCNU_18307(PF08768)
644548.SCNU_18207(PF03405)
644548.SCNU_14736(PF08768)
644548.SCNU_18187(PF03405)
644548.SCNU_08318(PF03405)
644548.SCNU_04971(PF00454)
644548.SCNU_01915(PF05277)
644548.SCNU_16723(PF00743)
644548.SCNU_11655(PF00743)
644548.SCNU_02802(PF03405)
644548.SCNU_16443(PF00743)
644548.SCNU_00980PF07460
644548.SCNU_03882(PF00743)
644548.SCNU_00285(PF08768)
644548.SCNU_03947(PF00743)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================