Effective results for Synechococcus sp. CC9311 (eggnog40)

Summary

Number of putative secreted proteins: 149
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 108 eukaryotic-like domains, contained in 149 proteins (20 high, 129 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
64471.sync_2148(PF16639) (PF01333)ER
64471.sync_2166PF00018(ER)
64471.sync_2545(PF06514)ER
64471.sync_2022(PF13326)ER; mitochondrial
64471.sync_1484(PF14159)mitochondrial; (mitochondrial)
64471.sync_2155(PF02507)ER
64471.sync_2561(PF05421)(mitochondrial); plastid
64471.sync_1858(PF00124)(mitochondrial)
64471.sync_0290(PF13301)ER
64471.sync_0072(PF04481)mitochondrial; (mitochondrial)
64471.sync_0469(PF12046)ER
64471.sync_0080(PF01737)ER
64471.sync_0642(PF13301)ER
64471.sync_2839PF00504(mitochondrial)
64471.sync_2749(PF03974)ER
64471.sync_2032(PF00140)(mitochondrial)
64471.sync_0098(PF00140)(mitochondrial); (plastid)
64471.sync_1912(PF10716)ER
64471.sync_1911(PF11460)ER
64471.sync_1856(PF00124)(mitochondrial); mitochondrial
64471.sync_1464(PF11196)ER
64471.sync_2462(PF07444)ER
64471.sync_1317(PF04483)(mitochondrial)
64471.sync_2925(PF16166)ER
64471.sync_2497(PF03209)ER; (ER)
64471.sync_2863(PF03974)ER
64471.sync_1407(PF10693)(ER)
64471.sync_1408(PF12159)ER
64471.sync_1409(PF01241)ER
64471.sync_0334(PF07444)ER
64471.sync_0755(PF09055)mitochondrial; (mitochondrial)
64471.sync_1039(PF01789)ER
64471.sync_2308(PF11805)ER
64471.sync_1424(PF03209)(ER)
64471.sync_0353(PF01716)ER
64471.sync_2434(PF09055)ER; (ER)
64471.sync_0345(PF04483)(mitochondrial)
64471.sync_2532(PF11196)ER
64471.sync_0978PF13764mitochondrial
64471.sync_0196(PF11623)plastid
64471.sync_2609(PF10664)(mitochondrial)
64471.sync_2028(PF11016)(ER)
64471.sync_1137PF06298ER; not used
64471.sync_0283(PF02533)(ER); not used
64471.sync_2299PF06298ER; not used
64471.sync_0297(PF11378)(ER)
64471.sync_2355PF00504(mitochondrial); not used
64471.sync_0874(PF01241)(plastid)
64471.sync_2461(PF06596)ER; not used
64471.sync_1313(PF05969)ER; not used
64471.sync_0306(PF12600)(mitochondrial)
64471.sync_0309(PF02468)ER; not used
64471.sync_0238(PF00283)ER; not used
64471.sync_0239(PF00284) (PF00283)
64471.sync_0438(PF11909)(mitochondrial)
64471.sync_2204(PF08855)(ER)
64471.sync_0591(PF13301)plastid
64471.sync_0902PF02005(plastid)
64471.sync_2391(PF10063)
64471.sync_2558(PF12095)
64471.sync_1979(PF08847)
64471.sync_0551(PF12899)
64471.sync_1152(PF10674)
64471.sync_1559(PF11347)
64471.sync_1555(PF07082)
64471.sync_2384(PF00124)
64471.sync_1018(PF00140)
64471.sync_2610(PF11371)
64471.sync_1831(PF08417)
64471.sync_1238PF00504not used
64471.sync_2375(PF11998)
64471.sync_2286(PF04839)
64471.sync_2575(PF11910)
64471.sync_1716(PF12527)
64471.sync_0445(PF10999)
64471.sync_1825(PF13911)
64471.sync_0533(PF01405)not used
64471.sync_0536(PF05151)not used
64471.sync_2586(PF00124)
64471.sync_1721(PF12452)
64471.sync_0291(PF09366)
64471.sync_0271PF03492
64471.sync_2357(PF04983)
64471.sync_2356(PF04983)
64471.sync_0509(PF06206)
64471.sync_0463(PF02531)
64471.sync_1592(PF11282)
64471.sync_1201(PF06799)
64471.sync_2907(PF00140)
64471.sync_1902(PF00140)
64471.sync_2344(PF11341)
64471.sync_0898(PF02392)
64471.sync_0897(PF00124)
64471.sync_1271(PF11833)
64471.sync_1274(PF12049)
64471.sync_1305(PF11210)
64471.sync_0450(PF14159)
64471.sync_1451(PF12204)
64471.sync_2801(PF01947)
64471.sync_1851PF00504
64471.sync_2484(PF02943)
64471.sync_2465PF00504
64471.sync_1867(PF08854)
64471.sync_0310(PF00737)
64471.sync_1263(PF00140)
64471.sync_2074PF00504
64471.sync_2075PF00504not used
64471.sync_1419(PF11264)
64471.sync_0307(PF02532)not used
64471.sync_1328(PF03040)
64471.sync_0236(PF01788)
64471.sync_0237PF02419not used
64471.sync_0935(PF05019)
64471.sync_1331(PF11152)
64471.sync_1656(PF05996)
64471.sync_2274(PF02941)
64471.sync_0439(PF12617)
64471.sync_2197(PF11317)
64471.sync_0594(PF08853)
64471.sync_1422PF03742not used
64471.sync_2855(PF00140)
64471.sync_2184PF00504
64471.sync_2439PF00504
64471.sync_0903(PF08041)not used
64471.sync_0765(PF13355)
64471.sync_0761(PF00140)
64471.sync_1366(PF09353)
64471.sync_1168(PF01744)
64471.sync_1445PF03492
64471.sync_2154(PF01701)not used
64471.sync_1759(PF10013)not used
64471.sync_2150(PF11267)
64471.sync_1629(PF11947)
64471.sync_0972(PF14159)
64471.sync_0716(PF05019)
64471.sync_0487(PF06206)
64471.sync_0376(PF09366)
64471.sync_0399(PF00796)not used
64471.sync_0398(PF02605)
64471.sync_0394(PF00223)
64471.sync_0393(PF00223)
64471.sync_2528PF00504not used
64471.sync_0562(PF02427)
64471.sync_0967(PF02529)not used
64471.sync_1387(PF11360)
64471.sync_0490(PF05996)
64471.sync_0491(PF05996)
64471.sync_1818PF00504
64471.sync_0368(PF00124)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================