Effective results for Rhodomicrobium vannielii ATCC 17100 (eggnog40)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 73 proteins (2 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
648757.Rvan_0412(PF03050)mitochondrial
648757.Rvan_0352(PF00839)ER
648757.Rvan_1003(PF03209)ER
648757.Rvan_2671(PF03050)mitochondrial
648757.Rvan_1902(PF03050)mitochondrial
648757.Rvan_2449(PF03050)mitochondrial
648757.Rvan_3557(PF00148)(mitochondrial); mitochondrial
648757.Rvan_2050(PF03050)mitochondrial
648757.Rvan_1957(PF00148)(mitochondrial)
648757.Rvan_0391(PF03050)mitochondrial
648757.Rvan_1442(PF03050)mitochondrial
648757.Rvan_3645(PF06455)ER
648757.Rvan_2341(PF00839)ER
648757.Rvan_1502(PF03050)mitochondrial
648757.Rvan_1478(PF03050)mitochondrial
648757.Rvan_2757PF00014ER
648757.Rvan_2224PF08017(mitochondrial)
648757.Rvan_2327(PF03209)(ER)
648757.Rvan_0323(PF13565)(plastid)
648757.Rvan_0506(PF00148)plastid
648757.Rvan_1908(PF13565)(plastid)
648757.Rvan_3171(PF13565)(plastid)
648757.Rvan_0396(PF13565)(plastid)
648757.Rvan_3060(PF13565)(plastid)
648757.Rvan_0717(PF13565)(plastid)
648757.Rvan_1534(PF01527) (PF03050)
648757.Rvan_3360(PF00148)(plastid)
648757.Rvan_1292(PF13565)(plastid)
648757.Rvan_2209(PF13565)(plastid)
648757.Rvan_3137(PF13565)(plastid)
648757.Rvan_0028(PF13565)(plastid)
648757.Rvan_0410(PF01527)
648757.Rvan_1783(PF01527)
648757.Rvan_2474(PF01527)
648757.Rvan_2476(PF03050)
648757.Rvan_1434(PF01527)
648757.Rvan_1926(PF05875)
648757.Rvan_1432(PF03050)
648757.Rvan_0507(PF00148)
648757.Rvan_0514(PF00148)
648757.Rvan_0516(PF00148)
648757.Rvan_2673(PF01527)
648757.Rvan_2451(PF01527)
648757.Rvan_1900(PF01527)
648757.Rvan_1769(PF01527)
648757.Rvan_1767(PF03050)
648757.Rvan_0997(PF00148)
648757.Rvan_0993(PF03209)
648757.Rvan_0998(PF00148)
648757.Rvan_3152(PF01527)
648757.Rvan_0192(PF00016)
648757.Rvan_1970(PF00016)
648757.Rvan_1480(PF01527)
648757.Rvan_2052(PF01527)
648757.Rvan_3558(PF00148)
648757.Rvan_3177(PF03050)
648757.Rvan_3179(PF01527)
648757.Rvan_1956(PF00148)
648757.Rvan_1954(PF00148)
648757.Rvan_1955(PF00148)
648757.Rvan_0393(PF01527)
648757.Rvan_0010(PF00016)
648757.Rvan_3590(PF00148)
648757.Rvan_3591(PF00148)
648757.Rvan_1440(PF01527)
648757.Rvan_2185(PF12576)
648757.Rvan_3362(PF00148)
648757.Rvan_0858(PF05875)
648757.Rvan_0212(PF00148)
648757.Rvan_0211(PF00148)
648757.Rvan_1500(PF01527)
648757.Rvan_1790(PF03050)
648757.Rvan_1792(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================