Effective results for Anaerococcus vaginalis ATCC 51170 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 22 proteins (1 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
655811.HMPREF0078_0970				(PF11070)	ER
655811.HMPREF0078_1175				(PF12646)	(ER)
655811.HMPREF0078_0532				(PF16199)	ER
655811.HMPREF0078_1436				PF02916	ER
655811.HMPREF0078_1457				(PF05738)	ER
655811.HMPREF0078_0862				(PF01992)	(mitochondrial)
655811.HMPREF0078_1512				(PF01813)	mitochondrial
655811.HMPREF0078_0858				(PF01990)	(ER)
655811.HMPREF0078_1456				(PF05738)	ER
655811.HMPREF0078_1458				(PF05738)	ER
655811.HMPREF0078_1286				(PF05738)	ER
655811.HMPREF0078_0856				(PF16886)	(mitochondrial)
655811.HMPREF0078_1164				(PF16199)
655811.HMPREF0078_1285				(PF05738)
655811.HMPREF0078_1515				(PF01990)
655811.HMPREF0078_1514				(PF16886)
655811.HMPREF0078_1517				(PF01991)
655811.HMPREF0078_1516				(PF01992)
655811.HMPREF0078_1519				(PF01496)
655811.HMPREF0078_0854				(PF01813)
655811.HMPREF0078_0719				(PF16199)
655811.HMPREF0078_0860				(PF01496)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================