Metamenu

Effective results for Ruminococcus sp. SR1/5 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 108 proteins (1 high, 107 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
657323.CK1_02580(PF01554)(ER)
657323.CK1_34030(PF01554)(ER)
657323.CK1_02240(PF01554)ER
657323.CK1_01210(PF01554)ER
657323.CK1_30680(PF02368)ER
657323.CK1_28680(PF13306)ER
657323.CK1_28420(PF05738)ER
657323.CK1_24500(PF16886)(mitochondrial)
657323.CK1_37310(PF00209)ER
657323.CK1_30520(PF13306)ER
657323.CK1_09890(PF14478)ER; (ER)
657323.CK1_06480(PF01554)(ER)
657323.CK1_24040(PF13306)ER
657323.CK1_28890(PF13306)ER
657323.CK1_09790(PF05738)(ER)
657323.CK1_09880(PF14478) (PF02368)(ER)
657323.CK1_13860(PF01992)(mitochondrial)
657323.CK1_06790(PF01554)ER
657323.CK1_29430(PF01554)ER
657323.CK1_26770(PF01554)ER
657323.CK1_16030(PF13306)ER
657323.CK1_29420(PF01554)ER
657323.CK1_19090(PF01554)ER
657323.CK1_37220(PF01554)(ER)
657323.CK1_11320(PF02368)ER
657323.CK1_32660(PF13306)ER
657323.CK1_32050(PF05738)ER
657323.CK1_33140(PF00209)(ER)
657323.CK1_13780(PF01554)(ER)
657323.CK1_18300(PF13306)(mitochondrial)
657323.CK1_24160(PF02368)ER
657323.CK1_10000(PF14478)ER
657323.CK1_30710(PF13306)ER
657323.CK1_04620(PF02368)ER
657323.CK1_11990(PF01554)ER
657323.CK1_03760(PF05738)(ER)
657323.CK1_34640(PF13155)(mitochondrial)
657323.CK1_26790(PF01554)(mitochondrial)
657323.CK1_12190(PF01554)(ER)
657323.CK1_18390(PF00209)(ER)
657323.CK1_37700(PF12646)
657323.CK1_37670(PF04607)
657323.CK1_13810(PF16886)
657323.CK1_23230(PF06695)
657323.CK1_22560(PF01795)
657323.CK1_12600(PF04961)
657323.CK1_18610(PF13151)
657323.CK1_37110(PF01554)
657323.CK1_04470(PF04607)
657323.CK1_26780(PF01554)
657323.CK1_23220(PF06695)
657323.CK1_05740PF13886
657323.CK1_09900(PF13306)
657323.CK1_17110(PF02368)
657323.CK1_38050(PF05704)
657323.CK1_02140(PF01554)
657323.CK1_10040(PF02368)
657323.CK1_13830(PF01990)
657323.CK1_24510(PF01990)
657323.CK1_37320(PF00209)
657323.CK1_34560(PF05738)
657323.CK1_12000(PF01554)
657323.CK1_17100(PF02368)
657323.CK1_18140(PF12437)
657323.CK1_06050(PF04607)
657323.CK1_01200(PF04607)
657323.CK1_37480(PF04607)
657323.CK1_25220(PF00209)
657323.CK1_26900(PF14490)
657323.CK1_28690(PF02368)
657323.CK1_28430(PF05738)
657323.CK1_00140(PF01554)
657323.CK1_06020(PF01554)
657323.CK1_24530(PF01991)
657323.CK1_27530(PF01967)not used
657323.CK1_04950(PF01554)
657323.CK1_31680(PF13151)
657323.CK1_38060(PF05704)
657323.CK1_32650(PF13306)
657323.CK1_06030(PF01554)
657323.CK1_10760(PF03690)
657323.CK1_24520(PF01992)
657323.CK1_23400(PF13306)
657323.CK1_07840(PF04607)
657323.CK1_03640(PF13155)
657323.CK1_12590(PF04961)
657323.CK1_28640(PF13306)
657323.CK1_33430(PF12437)
657323.CK1_18820(PF01509)
657323.CK1_27710(PF04607)
657323.CK1_19780(PF02368)
657323.CK1_29620(PF01554)
657323.CK1_18810(PF01509)
657323.CK1_18320(PF13155)
657323.CK1_27540(PF01967)
657323.CK1_10200(PF14490)
657323.CK1_34070(PF01554)
657323.CK1_07120(PF05738)
657323.CK1_39390(PF14490)
657323.CK1_10780(PF03690)
657323.CK1_19050(PF01795)
657323.CK1_15760(PF07247)
657323.CK1_02590(PF01554)
657323.CK1_09100(PF13910)
657323.CK1_30100(PF13155)
657323.CK1_26070(PF01967)
657323.CK1_26890(PF01554)
657323.CK1_09850(PF02368)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================