Effective results for Grimontia hollisae CIP 101886 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 25 proteins (3 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
675812.VHA_001502(PF02010)(ER); ER
675812.VHA_000904(PF00165)ER
675812.VHA_002617(PF13582)ER
675812.VHA_002766(PF08180)ER
675812.VHA_001299PF02205(mitochondrial); (plastid)
675812.VHA_002466(PF03199) (PF03917)
675812.VHA_001300(PF00102)
675812.VHA_003121PF01536
675812.VHA_001222(PF02371)
675812.VHA_002538(PF02371)
675812.VHA_001224(PF02371)
675812.VHA_002988(PF14216)
675812.VHA_001221(PF02371)
675812.VHA_002539(PF02371)
675812.VHA_002010(PF10462)
675812.VHA_001155(PF13402)
675812.VHA_001397(PF02371)
675812.VHA_001396(PF02371)
675812.VHA_000892(PF02371)
675812.VHA_001146(PF13402)
675812.VHA_001569(PF08732)
675812.VHA_002541(PF02371)
675812.VHA_002546(PF02371)
675812.VHA_002545(PF02371)
675812.VHA_003521PF10393

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================