Effective results for Prevotella amnii CRIS 21A-A (eggnog40)

Summary

Number of putative secreted proteins: 40
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 40 proteins (10 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
679191.HMPREF9018_0392(PF03051)ER
679191.HMPREF9018_0245(PF03412)(mitochondrial)
679191.HMPREF9018_1678(PF05693)(ER)
679191.HMPREF9018_1069(PF03051)ER
679191.HMPREF9018_1246(PF01715)mitochondrial; (mitochondrial)
679191.HMPREF9018_1191(PF03051)ER
679191.HMPREF9018_0552(PF03412)(mitochondrial)
679191.HMPREF9018_1570(PF03092)(ER)
679191.HMPREF9018_1639(PF01807) PF13155
679191.HMPREF9018_0803(PF01715)(mitochondrial)
679191.HMPREF9018_0922(PF01807) PF13155
679191.HMPREF9018_1534(PF01807) PF13155
679191.HMPREF9018_0372(PF07837) (PF02971)
679191.HMPREF9018_0656(PF03432)
679191.HMPREF9018_0529(PF03412)
679191.HMPREF9018_0097(PF03432)
679191.HMPREF9018_0708(PF03051)
679191.HMPREF9018_1546(PF03412)
679191.HMPREF9018_2025(PF03432)
679191.HMPREF9018_0472(PF03432)
679191.HMPREF9018_0475(PF03412)
679191.HMPREF9018_0916PF16269
679191.HMPREF9018_1786(PF03432)
679191.HMPREF9018_1395(PF03412)
679191.HMPREF9018_1860PF13155not used
679191.HMPREF9018_1460PF13155not used
679191.HMPREF9018_1462PF13155not used
679191.HMPREF9018_1465(PF03432)
679191.HMPREF9018_0805(PF02689)
679191.HMPREF9018_1215(PF16314)
679191.HMPREF9018_1857(PF03432)
679191.HMPREF9018_1329(PF03630)
679191.HMPREF9018_1453(PF01807)
679191.HMPREF9018_1531(PF03432)
679191.HMPREF9018_0551(PF03432)
679191.HMPREF9018_0548PF13155
679191.HMPREF9018_1313PF13155
679191.HMPREF9018_1484PF13155
679191.HMPREF9018_1791(PF03412)
679191.HMPREF9018_0731(PF16011)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================