Metamenu

Effective results for Intrasporangium calvum DSM 43043 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
710696.Intca_3418(PF05547)ER
710696.Intca_0137(PF08326)mitochondrial; (mitochondrial)
710696.Intca_2923(PF05547)(mitochondrial); ER
710696.Intca_2033(PF05547)ER; (ER)
710696.Intca_0881(PF05547)ER
710696.Intca_1043(PF01610)(ER)
710696.Intca_3575(PF05547)ER
710696.Intca_1146(PF01610)(ER)
710696.Intca_0323(PF01610)(mitochondrial)
710696.Intca_0794(PF01610)
710696.Intca_0559(PF01610)
710696.Intca_1562(PF01610)
710696.Intca_2495(PF10609)
710696.Intca_3524(PF08392)
710696.Intca_0649PF08213not used
710696.Intca_3517(PF01610)
710696.Intca_2818(PF10609)
710696.Intca_0877(PF01610)
710696.Intca_2591(PF10609)
710696.Intca_3550(PF02732)
710696.Intca_0330(PF00059)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================