Effective results for Pseudoxanthomonas suwonensis 11-1 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 41
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 10 proteins (1 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
743721.Psesu_2935+ER; (ER)
743721.Psesu_2658+(mitochondrial)
743721.Psesu_0260+(mitochondrial)
743721.Psesu_1930+ER
743721.Psesu_1591+ER
743721.Psesu_0519+(mitochondrial)
743721.Psesu_2709+ER
743721.Psesu_1925+ER
743721.Psesu_0661+ER
743721.Psesu_2568+ER
743721.Psesu_1159+ER
743721.Psesu_1976+ER
743721.Psesu_0030+ER
743721.Psesu_1369+ER
743721.Psesu_2097(PF06884)ER
743721.Psesu_1545+ER
743721.Psesu_2157(PF03901)(ER); ER
743721.Psesu_1182+ER
743721.Psesu_3008+ER
743721.Psesu_1777+ER
743721.Psesu_0493(PF11539)(mitochondrial)
743721.Psesu_0228(PF04505) (PF14237)
743721.Psesu_2313+(mitochondrial)
743721.Psesu_1219+(mitochondrial)
743721.Psesu_0259+
743721.Psesu_1278+
743721.Psesu_2817+
743721.Psesu_0395(PF04505)
743721.Psesu_2248PF17067not used
743721.Psesu_1292+
743721.Psesu_2227+
743721.Psesu_2732+
743721.Psesu_0075(PF13661)
743721.Psesu_2682+
743721.Psesu_2168+
743721.Psesu_2303+
743721.Psesu_0226(PF14237)
743721.Psesu_0227(PF14237)
743721.Psesu_1229(PF04768)
743721.Psesu_1165+
743721.Psesu_0528+
743721.Psesu_1422+
743721.Psesu_0639+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================