Effective results for Rahnella aquatilis CIP 78.65 = ATCC 33071 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 37 proteins (2 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
745277.Rahaq2_1388(PF13276)(mitochondrial)
745277.Rahaq2_2615(PF13276)(mitochondrial)
745277.Rahaq2_1363(PF02415)ER
745277.Rahaq2_2273(PF13276)(mitochondrial)
745277.Rahaq2_1210(PF13276)(mitochondrial)
745277.Rahaq2_3591(PF10462)ER
745277.Rahaq2_1358(PF13276)(mitochondrial)
745277.Rahaq2_1903(PF13276)(mitochondrial)
745277.Rahaq2_1859(PF13276)(mitochondrial)
745277.Rahaq2_0221(PF13276)(mitochondrial)
745277.Rahaq2_3193(PF02112)ER
745277.Rahaq2_3760(PF13276)(mitochondrial)
745277.Rahaq2_2753PF12255 (PF12256)
745277.Rahaq2_2747PF12255 (PF12256)
745277.Rahaq2_4409(PF13347)(ER)
745277.Rahaq2_1139(PF13347)
745277.Rahaq2_0550(PF13332)
745277.Rahaq2_4329(PF08950)
745277.Rahaq2_1146(PF13347)
745277.Rahaq2_3804(PF13347)
745277.Rahaq2_1979(PF00834)
745277.Rahaq2_0291(PF00834)
745277.Rahaq2_4334(PF13332)
745277.Rahaq2_2674(PF13276)
745277.Rahaq2_1533(PF05929)
745277.Rahaq2_3327(PF05929)
745277.Rahaq2_1255(PF13347)
745277.Rahaq2_1800(PF13347)
745277.Rahaq2_2755(PF03538)
745277.Rahaq2_4176(PF13347)
745277.Rahaq2_4177(PF13347)
745277.Rahaq2_2749(PF03538)
745277.Rahaq2_2171(PF13332)
745277.Rahaq2_2586(PF13347)
745277.Rahaq2_3567(PF00834)
745277.Rahaq2_3995(PF13347)
745277.Rahaq2_1120(PF16485)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================