Effective results for Brevundimonas diminuta ATCC 11568 (eggnog40)

Summary

Number of putative secreted proteins: 40
- Predicted by T4SEpre: 34
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 9 proteins (0 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
751586.BDIM_09710+(mitochondrial); (plastid)
751586.BDIM_00830+ER
751586.BDIM_26420+mitochondrial
751586.BDIM_19420+ER
751586.BDIM_11700+ER
751586.BDIM_19370+ER
751586.BDIM_19050(PF15891)ER
751586.BDIM_08480(PF13759) (PF09295)
751586.BDIM_01630(PF10544)
751586.BDIM_30310(PF10544)
751586.BDIM_27820+
751586.BDIM_23530(PF02224)
751586.BDIM_23520(PF02224)
751586.BDIM_12870+
751586.BDIM_01100+
751586.BDIM_29100+
751586.BDIM_23600+
751586.BDIM_15720+
751586.BDIM_09290+
751586.BDIM_06850+
751586.BDIM_08980+
751586.BDIM_10390+
751586.BDIM_21480(PF13661)
751586.BDIM_09170+
751586.BDIM_15370+
751586.BDIM_02800+
751586.BDIM_08430+
751586.BDIM_07210+
751586.BDIM_18110+
751586.BDIM_03690+
751586.BDIM_07990(PF13661)
751586.BDIM_00810+
751586.BDIM_15970+
751586.BDIM_02100+
751586.BDIM_24360+
751586.BDIM_20260+
751586.BDIM_11850+
751586.BDIM_04190+
751586.BDIM_08290+
751586.BDIM_11030(PF13759)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.0 (10/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================