Metamenu

Effective results for Eubacterium yurii subsp. margaretiae ATCC 43715 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 51 proteins (0 high, 51 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
864565.HMPREF0379_0027(PF13927) (PF00395)ER
864565.HMPREF0379_1604(PF00395)ER
864565.HMPREF0379_2059(PF01992)(mitochondrial)
864565.HMPREF0379_2056(PF01496)mitochondrial
864565.HMPREF0379_0378(PF00395)ER
864565.HMPREF0379_0026(PF00395)ER
864565.HMPREF0379_0028(PF00395)ER
864565.HMPREF0379_2063(PF01813)(mitochondrial)
864565.HMPREF0379_1533(PF00395)ER
864565.HMPREF0379_1500(PF00395)ER
864565.HMPREF0379_0499(PF00395)ER
864565.HMPREF0379_1874(PF00395)ER
864565.HMPREF0379_1915(PF00395)ER
864565.HMPREF0379_1649(PF00395)ER; (ER)
864565.HMPREF0379_0840(PF01992)(mitochondrial)
864565.HMPREF0379_0992(PF00395)ER
864565.HMPREF0379_1924(PF00395)ER
864565.HMPREF0379_1857(PF00395)ER
864565.HMPREF0379_1963(PF00395)(mitochondrial)
864565.HMPREF0379_0890(PF16199)(mitochondrial)
864565.HMPREF0379_1602(PF00395)(plastid)
864565.HMPREF0379_1502(PF13927) (PF00395)
864565.HMPREF0379_0881(PF02971) (PF07837)
864565.HMPREF0379_2043(PF00395)
864565.HMPREF0379_1146(PF01715)
864565.HMPREF0379_1145(PF01715)
864565.HMPREF0379_1383(PF00395)
864565.HMPREF0379_1703(PF16199)
864565.HMPREF0379_2058(PF01991)
864565.HMPREF0379_0289(PF00395)
864565.HMPREF0379_2060(PF01990)
864565.HMPREF0379_2061(PF16886)
864565.HMPREF0379_0035(PF16199)
864565.HMPREF0379_0354(PF14512)
864565.HMPREF0379_0641(PF13151)
864565.HMPREF0379_0340(PF00395)
864565.HMPREF0379_2133(PF00395)not used
864565.HMPREF0379_0076(PF14512)
864565.HMPREF0379_2124(PF00395)
864565.HMPREF0379_2127(PF00395)not used
864565.HMPREF0379_0810(PF12640)
864565.HMPREF0379_1245(PF01746)
864565.HMPREF0379_1246(PF01746)
864565.HMPREF0379_1498(PF13927)
864565.HMPREF0379_1499(PF00395)
864565.HMPREF0379_0629(PF00395)
864565.HMPREF0379_0845(PF16886)
864565.HMPREF0379_0847(PF01813)
864565.HMPREF0379_0841(PF01496)
864565.HMPREF0379_0843(PF01990)
864565.HMPREF0379_0984(PF12646)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================