Effective results for Streptococcus infantis SK1302 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 22 proteins (4 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
871237.SIN_1720+ER
871237.SIN_1992+ER
871237.SIN_0971PF04103ER
871237.SIN_0213+ER
871237.SIN_1296+ER
871237.SIN_0939+ER
871237.SIN_0441+(mitochondrial); (plastid)
871237.SIN_0274+mitochondrial
871237.SIN_1258+ER
871237.SIN_1654+mitochondrial
871237.SIN_0867(PF00344)ER; (ER)
871237.SIN_0780+ER
871237.SIN_1785+(mitochondrial); mitochondrial
871237.SIN_0882+ER
871237.SIN_1688+ER
871237.SIN_1114PF02916ER
871237.SIN_2011+ER
871237.SIN_1692+ER
871237.SIN_0420(PF03644)(mitochondrial)
871237.SIN_0186+ER
871237.SIN_0751+ER
871237.SIN_0190+(mitochondrial)
871237.SIN_0376(PF00344)mitochondrial
871237.SIN_2056+ER
871237.SIN_0765+mitochondrial; (mitochondrial)
871237.SIN_1965+(mitochondrial); (plastid)
871237.SIN_1148+ER
871237.SIN_0041+(ER)
871237.SIN_0743+(plastid)
871237.SIN_0105+(mitochondrial)
871237.SIN_0841(PF13246)
871237.SIN_0399+
871237.SIN_1054+
871237.SIN_0112+
871237.SIN_0824+
871237.SIN_0489+
871237.SIN_1444(PF04991)
871237.SIN_1443(PF04991)
871237.SIN_1440(PF04991)
871237.SIN_1995+
871237.SIN_0602+
871237.SIN_0604+
871237.SIN_0727+
871237.SIN_1982(PF01633)
871237.SIN_1983(PF01633)
871237.SIN_1676+
871237.SIN_1678(PF03848)
871237.SIN_1679(PF03848)
871237.SIN_1079+
871237.SIN_0930+
871237.SIN_0443+
871237.SIN_0847+
871237.SIN_0570+
871237.SIN_0479+
871237.SIN_0054+
871237.SIN_1894+
871237.SIN_1096+
871237.SIN_1255+
871237.SIN_0178PF00572not used
871237.SIN_0913+
871237.SIN_0910+
871237.SIN_0865+
871237.SIN_1376+
871237.SIN_1132+
871237.SIN_1130(PF05704)
871237.SIN_0899(PF08975)
871237.SIN_0256(PF13246)
871237.SIN_0087+
871237.SIN_2013+
871237.SIN_0508+
871237.SIN_1749+
871237.SIN_2003+
871237.SIN_0354+
871237.SIN_0357+
871237.SIN_2073+
871237.SIN_0185+
871237.SIN_1766+
871237.SIN_0166+
871237.SIN_0163+
871237.SIN_0381+
871237.SIN_0541+
871237.SIN_2063+
871237.SIN_1576+
871237.SIN_0375+
871237.SIN_0177PF00572
871237.SIN_1629(PF01765)
871237.SIN_0962+
871237.SIN_0251+
871237.SIN_1462+
871237.SIN_1967+
871237.SIN_1142(PF07555)
871237.SIN_1141(PF07555)
871237.SIN_1630(PF01765)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================