Effective results for Pseudoalteromonas tunicata D2 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 55 proteins (5 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
87626.PTD2_03361(PF16187)ER
87626.PTD2_03176(PF00883)ER; (mitochondrial)
87626.PTD2_18245(PF09317)ER
87626.PTD2_07289(PF03924)mitochondrial
87626.PTD2_05995(PF03924)(ER); ER
87626.PTD2_13144(PF08443)(mitochondrial)
87626.PTD2_00010(PF13718)mitochondrial
87626.PTD2_06090(PF16187)(ER)
87626.PTD2_07424(PF00728)ER
87626.PTD2_01386(PF00728)ER
87626.PTD2_21557(PF00728)ER
87626.PTD2_02156(PF04450)ER
87626.PTD2_09494(PF03924)ER
87626.PTD2_09652(PF08662)ER
87626.PTD2_20337(PF03924)(ER); ER
87626.PTD2_21212(PF00078)(mitochondrial)
87626.PTD2_01361(PF00728)ER
87626.PTD2_22672(PF09317)ER
87626.PTD2_01306(PF03924)ER
87626.PTD2_21002(PF00728)ER
87626.PTD2_01796PF04831ER
87626.PTD2_01951(PF00078)(mitochondrial)
87626.PTD2_00422PF02010(ER)
87626.PTD2_04016(PF08443)(ER)
87626.PTD2_21632(PF06315)(plastid)
87626.PTD2_13759(PF08443)(ER)
87626.PTD2_12834(PF10354)
87626.PTD2_11719(PF16187)
87626.PTD2_01431(PF00078)
87626.PTD2_02811(PF09317)
87626.PTD2_03211(PF12576)
87626.PTD2_06249PF00238
87626.PTD2_00851(PF00078)
87626.PTD2_00911(PF00883)
87626.PTD2_10999(PF00078)
87626.PTD2_04021(PF08443)
87626.PTD2_11004(PF00078)
87626.PTD2_12439(PF10013)not used
87626.PTD2_08804(PF00883)
87626.PTD2_22457(PF08459)
87626.PTD2_21552(PF00728)
87626.PTD2_22282(PF00078)
87626.PTD2_22725(PF08459)not used
87626.PTD2_03241PF02010
87626.PTD2_12629(PF00883)
87626.PTD2_04671(PF00078)
87626.PTD2_15222(PF08443)
87626.PTD2_21217(PF00078)
87626.PTD2_09743PF00238
87626.PTD2_07839(PF00078)
87626.PTD2_17037(PF08443)
87626.PTD2_16556(PF00078)
87626.PTD2_09569(PF13718)
87626.PTD2_21537(PF06315)
87626.PTD2_13289(PF00883)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================