Metamenu

Effective results for Vibrio anguillarum 775 (eggnog40)

Summary

Number of putative secreted proteins: 551
- Predicted by EffectiveT3: 162 (high confidence), 279 (low confidence)
- Predicted by EffectiveCCBD: 31 within, 25 before, 53 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
882102.VAA_00832+mitochondrial
882102.VAA_01169+(mitochondrial)
882102.VAA_00041(PF06042)mitochondrial
882102.VAA_03135+(mitochondrial)
882102.VAA_02173(<)ER
882102.VAA_01871(PF08180)ER
882102.VAA_01869+ER
882102.VAA_02256(>)ER
882102.VAA_02797(PF13582)ER
882102.VAA_01998+ER
882102.VAA_03179(>)ER
882102.VAA_02953(>)ER
882102.VAA_02426(>)ER
882102.VAA_00396+mitochondrial
882102.VAA_01042(>)mitochondrial
882102.VAA_01310(PF00031)ER
882102.VAA_01221+ER; (ER)
882102.VAA_03731+ER
882102.VAA_02332+ER
882102.VAA_01565+(ER)
882102.VAA_00405+(ER)
882102.VAA_00193PF04927(ER)
882102.VAA_01972(+)+ER
882102.VAA_02860+ER
882102.VAA_02008(>)ER
882102.VAA_02716+mitochondrial
882102.VAA_01013+mitochondrial
882102.VAA_00502+(ER)
882102.VAA_01345+(mitochondrial)
882102.VAA_00180(>)ER
882102.VAA_02276(>)ER
882102.VAA_02873(>)ER
882102.VAA_02494+ER
882102.VAA_02709(>)ER
882102.VAA_01009(>)(mitochondrial)
882102.VAA_00534(>)(mitochondrial)
882102.VAA_01105+ER
882102.VAA_02811+(mitochondrial)
882102.VAA_01425(PF10462)ER; (ER)
882102.VAA_01415(>)ER
882102.VAA_00275+(mitochondrial)
882102.VAA_02520+(mitochondrial)
882102.VAA_00915(+)(mitochondrial); (plastid)
882102.VAA_03337(+)ER
882102.VAA_03648(>)plastid
882102.VAA_02776(+)ER
882102.VAA_04004+(plastid)
882102.VAA_02508(+)mitochondrial; (mitochondrial)
882102.VAA_03209(+)ER
882102.VAA_02382(<)
882102.VAA_01675+
882102.VAA_01520(+)(ER); ER
882102.VAA_03566(+)(mitochondrial)
882102.VAA_03761+(plastid)
882102.VAA_02967(+)mitochondrial; (mitochondrial)
882102.VAA_03311+(plastid)
882102.VAA_03310+(ER)
882102.VAA_02954(>)(ER)
882102.VAA_02157(+)(mitochondrial); plastid
882102.VAA_00943(+)(mitochondrial)
882102.VAA_02303+(>)
882102.VAA_03647(+)(mitochondrial)
882102.VAA_00578(+)mitochondrial
882102.VAA_00971+(plastid)
882102.VAA_00978(+)mitochondrial; (mitochondrial)
882102.VAA_02354+(<)
882102.VAA_03885(+)mitochondrial; (mitochondrial)
882102.VAA_01892+(>)
882102.VAA_03429+plastid
882102.VAA_01812+(plastid)
882102.VAA_01784(+)(PF11523)(plastid)
882102.VAA_03639(+)(mitochondrial); plastid
882102.VAA_03527+(plastid)
882102.VAA_03520+(plastid)
882102.VAA_02859(+)(mitochondrial); plastid
882102.VAA_02070(+)ER
882102.VAA_01801+(ER)
882102.VAA_02661+(mitochondrial); not used
882102.VAA_01878+(mitochondrial)
882102.VAA_00344(+)(ER); ER
882102.VAA_00232(>)plastid
882102.VAA_03470(+)(mitochondrial); plastid
882102.VAA_04238(<)ER; not used
882102.VAA_01358+(ER)
882102.VAA_00537(+)ER
882102.VAA_00241+(>)
882102.VAA_02366(+)ER
882102.VAA_03511+plastid
882102.VAA_03469+(plastid)
882102.VAA_01100(+)ER
882102.VAA_03078(+)(mitochondrial)
882102.VAA_03670+(mitochondrial)
882102.VAA_01735(+)(ER)
882102.VAA_01424(+)ER
882102.VAA_01126+
882102.VAA_00654(+)(mitochondrial)
882102.VAA_01385(+)ER
882102.VAA_01416+
882102.VAA_03725+
882102.VAA_03125+
882102.VAA_03126+
882102.VAA_03651+
882102.VAA_01247(<)
882102.VAA_01402+
882102.VAA_00732+
882102.VAA_00288+
882102.VAA_00910+not used
882102.VAA_03005+
882102.VAA_03004+
882102.VAA_02600+
882102.VAA_02604+
882102.VAA_02191(+)plastid
882102.VAA_02195+
882102.VAA_03919(PF03050)
882102.VAA_01890(+)(mitochondrial)
882102.VAA_01275(+)(ER)
882102.VAA_01657+
882102.VAA_00709(+)(ER)
882102.VAA_01503+
882102.VAA_00299+
882102.VAA_00298+
882102.VAA_00293+
882102.VAA_00902(>)
882102.VAA_00905(+)(ER)
882102.VAA_02610+
882102.VAA_03967(PF03050)
882102.VAA_02502+
882102.VAA_02766(>)
882102.VAA_01465+
882102.VAA_00600(>)
882102.VAA_01515+
882102.VAA_00930+
882102.VAA_00333+
882102.VAA_01365+
882102.VAA_01713+
882102.VAA_03596+
882102.VAA_03593+
882102.VAA_03592(>)
882102.VAA_00751(+)(mitochondrial)
882102.VAA_03753(+)(mitochondrial)
882102.VAA_02409(<)not used
882102.VAA_02407(+)(>)
882102.VAA_02081(+)(mitochondrial)
882102.VAA_01985(+)+
882102.VAA_01980+
882102.VAA_00724+
882102.VAA_02451+
882102.VAA_02885+
882102.VAA_01188+
882102.VAA_01693+
882102.VAA_01695(+)+
882102.VAA_01699(>)
882102.VAA_01325+
882102.VAA_00584+
882102.VAA_04065(PF03050)
882102.VAA_04060(PF03050)
882102.VAA_00921+
882102.VAA_03306(>)
882102.VAA_03785+
882102.VAA_03054+
882102.VAA_02960+
882102.VAA_03949(PF03050)
882102.VAA_02416(+)(plastid)
882102.VAA_02568+
882102.VAA_02095+
882102.VAA_02090(+)(<)
882102.VAA_02893+
882102.VAA_04320(PF03050)
882102.VAA_01689+
882102.VAA_04257(PF03050)
882102.VAA_01445+
882102.VAA_03273(+)(mitochondrial)
882102.VAA_04071(PF03050)
882102.VAA_00559+
882102.VAA_03877+
882102.VAA_03777(>)
882102.VAA_02316(>)
882102.VAA_02312(>)
882102.VAA_03957+
882102.VAA_04315+
882102.VAA_03479+
882102.VAA_00949(+)(PF05706)
882102.VAA_01875+
882102.VAA_00394+not used
882102.VAA_00120+
882102.VAA_03094(PF08732)
882102.VAA_01383+
882102.VAA_02308+
882102.VAA_02124+
882102.VAA_03891(PF03050)
882102.VAA_02237+
882102.VAA_03636+
882102.VAA_02435(+)(ER)
882102.VAA_02348+
882102.VAA_04307(+)(>)
882102.VAA_01829+
882102.VAA_00803(<)
882102.VAA_01316+
882102.VAA_01557+
882102.VAA_04051(PF03050)
882102.VAA_00570+
882102.VAA_01757+
882102.VAA_04454(>)
882102.VAA_00207+
882102.VAA_03456+
882102.VAA_03088(+)+
882102.VAA_03086+
882102.VAA_03550+
882102.VAA_02331+
882102.VAA_02835+
882102.VAA_03426(+)(>)
882102.VAA_01324(+)(mitochondrial)
882102.VAA_01147(+)(ER)
882102.VAA_01810(>)
882102.VAA_00787(+)(ER)
882102.VAA_01962(>)
882102.VAA_01963+
882102.VAA_00565+
882102.VAA_00142(+)+
882102.VAA_00960(<)
882102.VAA_00367(PF00303)
882102.VAA_00363(<)
882102.VAA_03525(>)
882102.VAA_03522(+)plastid
882102.VAA_02212(>)
882102.VAA_02215(+)(>)
882102.VAA_02079(>)
882102.VAA_01360+
882102.VAA_02072+
882102.VAA_02456(+)(plastid)
882102.VAA_01021(+)(>)
882102.VAA_01371+
882102.VAA_00175(>)
882102.VAA_00999+
882102.VAA_00994+
882102.VAA_00995(<)
882102.VAA_00353(+)(mitochondrial)
882102.VAA_00226(PF06042)
882102.VAA_00228(PF07653)
882102.VAA_00004(+)(mitochondrial)
882102.VAA_03433+
882102.VAA_03629(>)
882102.VAA_03623+
882102.VAA_03533+
882102.VAA_03326(>)
882102.VAA_02267(+)(mitochondrial)
882102.VAA_02230(+)(plastid)
882102.VAA_02540+
882102.VAA_02467+
882102.VAA_02710+
882102.VAA_02714+
882102.VAA_00519(>)
882102.VAA_01904(>)
882102.VAA_00697+
882102.VAA_01589+
882102.VAA_01583(>)
882102.VAA_01342+
882102.VAA_00183+
882102.VAA_00434+
882102.VAA_03613(>)
882102.VAA_03042+
882102.VAA_02906+
882102.VAA_00456+
882102.VAA_02876+
882102.VAA_02017+
882102.VAA_00451+
882102.VAA_02011+
882102.VAA_00450+
882102.VAA_02499+
882102.VAA_02705+
882102.VAA_01007+
882102.VAA_02144+not used
882102.VAA_04234+
882102.VAA_01826(>)
882102.VAA_01756+
882102.VAA_00404(PF00303)
882102.VAA_00403(PF00303)
882102.VAA_00536+
882102.VAA_00242+
882102.VAA_02249+
882102.VAA_02243(<)
882102.VAA_02969(<)
882102.VAA_03517+
882102.VAA_03280(+)plastid
882102.VAA_02646(<)
882102.VAA_03946(PF03050)
882102.VAA_02801(<)
882102.VAA_02802+
882102.VAA_03465(<)
882102.VAA_03467+
882102.VAA_02809+
882102.VAA_03466+
882102.VAA_02738+
882102.VAA_01929+
882102.VAA_01299+
882102.VAA_00747(<)
882102.VAA_00866+
882102.VAA_00410(<)
882102.VAA_1856+
882102.VAA_01322+
882102.VAA_03076+
882102.VAA_03257+
882102.VAA_03385(<)
882102.VAA_02253(<)
882102.VAA_02652+
882102.VAA_02031+
882102.VAA_02038+
882102.VAA_01606(+)(<)
882102.VAA_01118(<)
882102.VAA_00640+
882102.VAA_00645+
882102.VAA_01933(<)
882102.VAA_01427+
882102.VAA_01429+
882102.VAA_00460+
882102.VAA_00067+not used
882102.VAA_01294+
882102.VAA_02617+
882102.VAA_02346(+)(plastid)
882102.VAA_03063(+)(>)
882102.VAA_01444+
882102.VAA_01337+
882102.VAA_03399(+)(<)
882102.VAA_03480+
882102.VAA_03513+
882102.VAA_03512+
882102.VAA_00658(<)
882102.VAA_01705+
882102.VAA_00657+not used
882102.VAA_00897(+)(ER)
882102.VAA_00896+
882102.VAA_00899+not used
882102.VAA_00077+
882102.VAA_00271+
882102.VAA_00389+
882102.VAA_00001+
882102.VAA_01250+
882102.VAA_03011(PF03050)
882102.VAA_01168(+)
882102.VAA_03726(+)
882102.VAA_03721(+)
882102.VAA_03658(+)
882102.VAA_0096(+)
882102.VAA_01828(+)
882102.VAA_00666(+)
882102.VAA_01621(+)
882102.VAA_01401(+)
882102.VAA_04291(+)
882102.VAA_02823(+)
882102.VAA_02839(+)
882102.VAA_02292(+)
882102.VAA_03009(+)
882102.VAA_03227(+)
882102.VAA_03646(+)
882102.VAA_02518(+)
882102.VAA_02606(+)
882102.VAA_02199(+)
882102.VAA_02190(+)
882102.VAA_02770(+)
882102.VAA_00507(+)
882102.VAA_00291(+)
882102.VAA_00290(+)
882102.VAA_04019(+)not used
882102.VAA_04087(+)
882102.VAA_04085(+)
882102.VAA_03038(+)
882102.VAA_03037(+)
882102.VAA_03107(+)
882102.VAA_02613(+)
882102.VAA_02184(+)
882102.VAA_02982(+)
882102.VAA_02166(+)
882102.VAA_02165(+)
882102.VAA_02386(+)
882102.VAA_00846(+)
882102.VAA_01868(+)
882102.VAA_00609(+)
882102.VAA_00590(+)
882102.VAA_00754(+)
882102.VAA_03023(+)
882102.VAA_03110(+)
882102.VAA_02420(+)
882102.VAA_02155(+)
882102.VAA_02086(+)
882102.VAA_01072(+)
882102.VAA_02889(+)
882102.VAA_02886(+)
882102.VAA_01187(+)
882102.VAA_01850(+)
882102.VAA_01452(+)
882102.VAA_00613(+)
882102.VAA_04068(+)
882102.VAA_04069(+)
882102.VAA_00326(+)
882102.VAA_00329(+)
882102.VAA_02666(+)
882102.VAA_00729(+)
882102.VAA_02363(+)
882102.VAA_00705(+)
882102.VAA_02890(+)
882102.VAA_00730(+)not used
882102.VAA_00827(+)
882102.VAA_04255(+)
882102.VAA_00622(+)
882102.VAA_00481(+)
882102.VAA_03200(+)
882102.VAA_03573(+)
882102.VAA_03792(+)
882102.VAA_03951(+)
882102.VAA_03952(+)
882102.VAA_03958(+)not used
882102.VAA_01949(+)
882102.VAA_04318(+)not used
882102.VAA_04312(+)
882102.VAA_00635(+)
882102.VAA_01535(+)
882102.VAA_00540(+)
882102.VAA_01874(+)
882102.VAA_00303(+)
882102.VAA_00307(+)
882102.VAA_02700(+)
882102.VAA_00945(+)
882102.VAA_03091(+)
882102.VAA_02549(+)
882102.VAA_02232(+)
882102.VAA_01068(+)
882102.VAA_02056(+)
882102.VAA_03645(+)
882102.VAA_04309(+)
882102.VAA_04304(+)
882102.VAA_01044(+)
882102.VAA_01951(+)
882102.VAA_01958(+)
882102.VAA_03458+
882102.VAA_01553(+)
882102.VAA_03451(+)
882102.VAA_03452(+)not used
882102.VAA_03085(+)
882102.VAA_02333(+)
882102.VAA_02684(+)
882102.VAA_02206(+)
882102.VAA_02593(+)
882102.VAA_02062(+)
882102.VAA_02444(+)
882102.VAA_02851(+)
882102.VAA_01891(+)
882102.VAA_01141(+)
882102.VAA_01146(+)
882102.VAA_0067(+)
882102.VAA_00814(+)
882102.VAA_01496(+)
882102.VAA_01966(+)
882102.VAA_01960(+)
882102.VAA_01764(+)
882102.VAA_00567(+)
882102.VAA_04194(+)
882102.VAA_00141+
882102.VAA_04062(+)
882102.VAA_00964(+)
882102.VAA_00966(+)
882102.VAA_01522(+)
882102.VAA_02904(+)
882102.VAA_00210(+)
882102.VAA_03521(+)
882102.VAA_02326(+)
882102.VAA_02695(+)
882102.VAA_02219(+)
882102.VAA_02076(+)
882102.VAA_02459(+)
882102.VAA_00512(+)
882102.VAA_01480(+)
882102.VAA_00424(+)
882102.VAA_00770(+)
882102.VAA_01651(+)
882102.VAA_02460(+)
882102.VAA_02712(+)
882102.VAA_02713(+)
882102.VAA_01012(+)
882102.VAA_01016(+)
882102.VAA_03191(+)
882102.VAA_00764(+)
882102.VAA_01340(+)
882102.VAA_00438(+)
882102.VAA_00050(+)
882102.VAA_02350(+)
882102.VAA_03047(+)
882102.VAA_03270(+)
882102.VAA_03474(+)
882102.VAA_01758(+)
882102.VAA_01598(+)
882102.VAA_02390(+)
882102.VAA_01359(+)
882102.VAA_01319(+)
882102.VAA_03419(+)
882102.VAA_01279(+)
882102.VAA_03262(+)
882102.VAA_02649(+)
882102.VAA_02246(+)not used
882102.VAA_03945(+)
882102.VAA_03461(+)
882102.VAA_02020(+)
882102.VAA_02025(+)
882102.VAA_01614(+)
882102.VAA_01729(+)
882102.VAA_01430(+)
882102.VAA_04053(+)
882102.VAA_01436(+)
882102.VAA_00867(+)
882102.VAA_00529(+)
882102.VAA_04211(+)not used
882102.VAA_02867(+)
882102.VAA_00258(+)
882102.VAA_03989(+)not used
882102.VAA_03071(+)
882102.VAA_04063(+)
882102.VAA_03622(+)
882102.VAA_03679(+)
882102.VAA_02816(+)
882102.VAA_02818(+)
882102.VAA_02650(+)
882102.VAA_02657(+)
882102.VAA_02033(+)
882102.VAA_01935(+)
882102.VAA_04321(+)
882102.VAA_01420(+)
882102.VAA_01428(+)
882102.VAA_00064(+)
882102.VAA_01924(+)
882102.VAA_03745(+)
882102.VAA_03746(+)
882102.VAA_04258(+)not used
882102.VAA_01792(+)
882102.VAA_00882(+)
882102.VAA_01333(+)
882102.VAA_02820(+)
882102.VAA_02625(+)
882102.VAA_03965(+)
882102.VAA_03961(+)
882102.VAA_01497(+)
882102.VAA_00627(+)
882102.VAA_01638(+)
882102.VAA_01706(+)
882102.VAA_01256(+)
882102.VAA_00655(+)
882102.VAA_03998(+)not used
882102.VAA_01417(+)
882102.VAA_01533(+)
882102.VAA_04282(+)
882102.VAA_00272(+)
882102.VAA_00005(+)
882102.VAA_00955(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================