Effective results for Burkholderia rhizoxinica HKI 454 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 60
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 19 proteins (3 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
882378.RBRH_00881+(PF13683)(mitochondrial)
882378.RBRH_01930+(PF13683)(mitochondrial)
882378.RBRH_03171+(PF13683)(mitochondrial)
882378.RBRH_04001+(PF13683)(mitochondrial)
882378.RBRH_02281+ER
882378.RBRH_00083+(mitochondrial)
882378.RBRH_01571+mitochondrial
882378.RBRH_03849+ER
882378.RBRH_02136+mitochondrial
882378.RBRH_03061+ER
882378.RBRH_00205+mitochondrial
882378.RBRH_02937+ER
882378.RBRH_04070+(mitochondrial)
882378.RBRH_03571+(mitochondrial)
882378.RBRH_03429(PF13906)ER
882378.RBRH_04048+mitochondrial
882378.RBRH_01054+mitochondrial; (mitochondrial)
882378.RBRH_03215+(mitochondrial)
882378.RBRH_03597+(mitochondrial)
882378.RBRH_02612+mitochondrial
882378.RBRH_01129(PF13683)(plastid)
882378.RBRH_02273+(mitochondrial)
882378.RBRH_01938+(mitochondrial)
882378.RBRH_03717+(plastid)
882378.RBRH_01444+(mitochondrial)
882378.RBRH_02344+(mitochondrial)
882378.RBRH_03769+(plastid)
882378.RBRH_03972+(ER)
882378.RBRH_00041+
882378.RBRH_03958+
882378.RBRH_03726+
882378.RBRH_03288+
882378.RBRH_03848+
882378.RBRH_02223+
882378.RBRH_03068+
882378.RBRH_00766+
882378.RBRH_02929+
882378.RBRH_03212+
882378.RBRH_02021(PF13683)
882378.RBRH_02442+
882378.RBRH_02198+
882378.RBRH_04185+
882378.RBRH_01334+
882378.RBRH_02910+
882378.RBRH_02048+
882378.RBRH_00826+
882378.RBRH_03407PF00646
882378.RBRH_00034+
882378.RBRH_01491+
882378.RBRH_03413+
882378.RBRH_03920PF00646
882378.RBRH_03324+
882378.RBRH_02642(PF08242)
882378.RBRH_01506(PF08242)
882378.RBRH_03169(PF13683)not used
882378.RBRH_03166PF00646
882378.RBRH_02578(PF08242)
882378.RBRH_02576(PF08242)
882378.RBRH_02577(PF08242)
882378.RBRH_02570(PF03538)
882378.RBRH_00122+
882378.RBRH_04000(PF13683)not used
882378.RBRH_01149(PF13683)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================