Effective results for Lachnoanaerobaculum saburreum DSM 3986 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 29 proteins (13 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
887325.HMPREF0381_1386PF06541(mitochondrial); mitochondrial
887325.HMPREF0381_0257(PF03083)(ER)
887325.HMPREF0381_2399PF06541ER
887325.HMPREF0381_1069(PF13151)(mitochondrial)
887325.HMPREF0381_2584PF06541ER; (ER)
887325.HMPREF0381_2934(PF02522)(mitochondrial)
887325.HMPREF0381_1570PF06541ER
887325.HMPREF0381_1676(PF11175)(plastid)
887325.HMPREF0381_1485(PF12847)(mitochondrial)
887325.HMPREF0381_2585PF06541ER; not used
887325.HMPREF0381_1571PF06541(plastid)
887325.HMPREF0381_2850(PF02522)
887325.HMPREF0381_2944(PF02522)
887325.HMPREF0381_2598PF16804
887325.HMPREF0381_2591PF16804
887325.HMPREF0381_2841(PF03083)
887325.HMPREF0381_2933(PF02522)not used
887325.HMPREF0381_1590(PF14512)
887325.HMPREF0381_0799PF00627
887325.HMPREF0381_1361(PF16889)
887325.HMPREF0381_1362(PF16889)
887325.HMPREF0381_0094(PF02732)
887325.HMPREF0381_1798(PF12847)
887325.HMPREF0381_2174PF01885
887325.HMPREF0381_1893PF01885
887325.HMPREF0381_2180PF01885
887325.HMPREF0381_2352PF01885
887325.HMPREF0381_1041(PF14512)
887325.HMPREF0381_0242(PF11175)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================