Metamenu

Effective results for Streptococcus downei F0415 (eggnog40)

Summary

Number of putative secreted proteins: 136
- Predicted by T4SEpre: 98
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 54 proteins (13 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
904293.HMPREF9176_0357+(PF05257)ER
904293.HMPREF9176_0335(PF05257)ER
904293.HMPREF9176_0041+mitochondrial
904293.HMPREF9176_2145+ER
904293.HMPREF9176_2205+ER
904293.HMPREF9176_1773+ER
904293.HMPREF9176_0836+(ER)
904293.HMPREF9176_1942+ER
904293.HMPREF9176_1997(PF01609)mitochondrial
904293.HMPREF9176_1576+ER
904293.HMPREF9176_1961(PF01609)(mitochondrial); mitochondrial
904293.HMPREF9176_0109+ER
904293.HMPREF9176_0615+ER
904293.HMPREF9176_1217+ER
904293.HMPREF9176_0585+ER
904293.HMPREF9176_0776+ER
904293.HMPREF9176_0570+ER
904293.HMPREF9176_0379+ER
904293.HMPREF9176_0593+(mitochondrial); (plastid)
904293.HMPREF9176_0748+(ER)
904293.HMPREF9176_0122+ER
904293.HMPREF9176_0635PF07202ER
904293.HMPREF9176_0914+ER
904293.HMPREF9176_0917+ER
904293.HMPREF9176_1241(PF05257)(ER)
904293.HMPREF9176_1712+ER
904293.HMPREF9176_0898+ER
904293.HMPREF9176_0257(PF01609)mitochondrial; (mitochondrial)
904293.HMPREF9176_0070(PF05257)ER
904293.HMPREF9176_1077+ER
904293.HMPREF9176_2103(PF01609)mitochondrial
904293.HMPREF9176_0715(PF05257)ER
904293.HMPREF9176_1598+ER; (ER)
904293.HMPREF9176_0667+(mitochondrial)
904293.HMPREF9176_1449+(ER)
904293.HMPREF9176_1443+ER
904293.HMPREF9176_1620+ER
904293.HMPREF9176_1343+(PF06414)
904293.HMPREF9176_0235(PF05598) (PF01609)
904293.HMPREF9176_0425(PF05598) (PF01609)
904293.HMPREF9176_1220(PF05598) (PF01609)
904293.HMPREF9176_1012(PF05598) (PF01609)
904293.HMPREF9176_2077+(ER)
904293.HMPREF9176_0751(PF05598) (PF01609)
904293.HMPREF9176_1405(PF05598) (PF01609)
904293.HMPREF9176_1662+(ER)
904293.HMPREF9176_1877(PF05598) (PF01609)
904293.HMPREF9176_2189(PF05598) (PF01609)
904293.HMPREF9176_2262PF02916(ER)
904293.HMPREF9176_1805+
904293.HMPREF9176_0190+
904293.HMPREF9176_0196+
904293.HMPREF9176_1333(PF00165)not used
904293.HMPREF9176_1432(PF01609)
904293.HMPREF9176_2179+
904293.HMPREF9176_2171+
904293.HMPREF9176_1810(PF01609)
904293.HMPREF9176_0320(PF00834)
904293.HMPREF9176_0321+
904293.HMPREF9176_0140+
904293.HMPREF9176_1140+
904293.HMPREF9176_1144+
904293.HMPREF9176_1147+
904293.HMPREF9176_2209+
904293.HMPREF9176_0449(PF00834)
904293.HMPREF9176_0448(PF05598)
904293.HMPREF9176_0443+
904293.HMPREF9176_0021(PF05598)
904293.HMPREF9176_0020(PF01609)
904293.HMPREF9176_0026PF13020
904293.HMPREF9176_1173+
904293.HMPREF9176_0943+
904293.HMPREF9176_0160+
904293.HMPREF9176_0164+
904293.HMPREF9176_0166+
904293.HMPREF9176_1788(PF01609)
904293.HMPREF9176_0494(PF01609)
904293.HMPREF9176_0495(PF01609)
904293.HMPREF9176_1762+
904293.HMPREF9176_2099(PF01609)
904293.HMPREF9176_0221+
904293.HMPREF9176_0795+
904293.HMPREF9176_0552+
904293.HMPREF9176_0004PF13020
904293.HMPREF9176_1687+
904293.HMPREF9176_0817+
904293.HMPREF9176_1967+
904293.HMPREF9176_0566(PF01609)
904293.HMPREF9176_1742+
904293.HMPREF9176_2054+
904293.HMPREF9176_0589+
904293.HMPREF9176_0424+
904293.HMPREF9176_0114+
904293.HMPREF9176_0603+
904293.HMPREF9176_1045+
904293.HMPREF9176_0599PF13020
904293.HMPREF9176_1643+
904293.HMPREF9176_0908PF13020
904293.HMPREF9176_2195+
904293.HMPREF9176_2186+
904293.HMPREF9176_2294PF13020
904293.HMPREF9176_0743PF13020
904293.HMPREF9176_1431(PF05598)
904293.HMPREF9176_1501+
904293.HMPREF9176_0450(PF00834)
904293.HMPREF9176_1402+
904293.HMPREF9176_0626+
904293.HMPREF9176_1246+
904293.HMPREF9176_1896+
904293.HMPREF9176_0430+
904293.HMPREF9176_1259+
904293.HMPREF9176_1679(PF01609)
904293.HMPREF9176_0936+
904293.HMPREF9176_0392+
904293.HMPREF9176_2000+
904293.HMPREF9176_1211+
904293.HMPREF9176_2256+
904293.HMPREF9176_0256(PF01609)
904293.HMPREF9176_0605PF13020
904293.HMPREF9176_0099PF13020
904293.HMPREF9176_0095(PF01609)
904293.HMPREF9176_0096(PF05598)
904293.HMPREF9176_1619+
904293.HMPREF9176_1108+
904293.HMPREF9176_0700+
904293.HMPREF9176_2100(PF05598)
904293.HMPREF9176_2102(PF01609)
904293.HMPREF9176_2107(PF06414)
904293.HMPREF9176_0062PF13020
904293.HMPREF9176_0273PF13020
904293.HMPREF9176_1052PF13020
904293.HMPREF9176_0183+
904293.HMPREF9176_1123+
904293.HMPREF9176_0868+
904293.HMPREF9176_0861+
904293.HMPREF9176_0860(PF05598)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================