Effective results for Ornithinibacillus scapharcae TW25 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
981383.OTW25_010100008879(PF13367)ER
981383.OTW25_010100002310(PF03959)ER
981383.OTW25_010100005225(PF13367)(ER)
981383.OTW25_010100009724PF00609(mitochondrial)
981383.OTW25_010100005917(PF02681)(ER)
981383.OTW25_010100010284(PF03851)(ER)
981383.OTW25_010100010289(PF03851)(ER)
981383.OTW25_010100001310(PF01154) (PF08540)
981383.OTW25_010100015576(PF01154) (PF08540)
981383.OTW25_010100016185(PF12606)ER; not used
981383.OTW25_010100006587(PF03596)
981383.OTW25_010100010949(PF03984)
981383.OTW25_010100006377(PF16804)
981383.OTW25_010100007499(PF12638)
981383.OTW25_010100019358(PF08761)
981383.OTW25_010100019353(PF08761)
981383.OTW25_010100004940(PF13427)
981383.OTW25_010100003019(PF13367)
981383.OTW25_010100013186(PF03417)
981383.OTW25_010100009794(PF05495)
981383.OTW25_010100011994(PF03630)
981383.OTW25_010100014991(PF03417)
981383.OTW25_010100015636(PF13427)
981383.OTW25_010100013306(PF03596)
981383.OTW25_010100009779(PF03417)
981383.OTW25_010100006917(PF02681)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================