Effective results for Prevotella nigrescens ATCC 33563 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 31 proteins (2 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
997352.HMPREF9419_1724(PF03051)ER; (ER)
997352.HMPREF9419_2283(PF13306)ER
997352.HMPREF9419_1267(PF03051)ER
997352.HMPREF9419_1074(PF13306)ER
997352.HMPREF9419_1292(PF13306)ER
997352.HMPREF9419_0082(PF13306)ER
997352.HMPREF9419_0715(PF03051)ER
997352.HMPREF9419_1584(PF13306)ER
997352.HMPREF9419_1812(PF13306)ER
997352.HMPREF9419_0866(PF13306)ER
997352.HMPREF9419_0863(PF13306)ER
997352.HMPREF9419_0158PF12812ER
997352.HMPREF9419_0484PF16269(mitochondrial)
997352.HMPREF9419_2063(PF05686)(ER)
997352.HMPREF9419_1412(PF13306)(ER)
997352.HMPREF9419_0622(PF02971) (PF07837)
997352.HMPREF9419_2308(PF05034) (PF07476)
997352.HMPREF9419_2409(PF05970) (PF02689)not used
997352.HMPREF9419_2196(PF13306)
997352.HMPREF9419_0900(PF01715)
997352.HMPREF9419_0358(PF01715)
997352.HMPREF9419_1663(PF05693)
997352.HMPREF9419_0672(PF03630)
997352.HMPREF9419_2256(PF13306)
997352.HMPREF9419_1857(PF04991)
997352.HMPREF9419_0500(PF16314)
997352.HMPREF9419_0692(PF04991)
997352.HMPREF9419_1932(PF13306)
997352.HMPREF9419_1346(PF04991)
997352.HMPREF9419_1799(PF05970)
997352.HMPREF9419_2311(PF14330)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================